PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013138
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 25198 Da    PI: 10.2762
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351823PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8918PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.4e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k ien +nrqvtfskRr g+ KKA+ELSvLC+aeva+i+fs+tgkl+ +ss
  Pgl013138  9 KMIENPTNRQVTFSKRRGGLTKKAQELSVLCNAEVALIVFSNTGKLHQWSS 59
               68***********************************************96 PP
2K-box67.25.6e-2374168599
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +g  l + ++++l  e++++ ke+e+Lq  +Rh+ Ged++sL+l eL +Le+qLe + +++R +K+++l ++  + ++ke++lq+en+ L+++++
  Pgl013138  74 QGLGLMDYQHQQLLFEMRRITKENESLQARLRHMRGEDINSLKLPELFNLEKQLEVASTQVRRRKDHVLDNEKIKRKNKERRLQQENMILQEMVD 168
                3444888999*********************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-35293IPR002100Transcription factor, MADS-box
CDDcd002651.97E-42275No hitNo description
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-1882167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.08483173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRGKIEIKM IENPTNRQVT FSKRRGGLTK KAQELSVLCN AEVALIVFSN TGKLHQWSSS  60
SMKKVLERYQ KSEQGLGLMD YQHQQLLFEM RRITKENESL QARLRHMRGE DINSLKLPEL  120
FNLEKQLEVA STQVRRRKDH VLDNEKIKRK NKERRLQQEN MILQEMVDQH HGHMEEDNGE  180
INFVLCQPLK RLSTAFPAPL LRLQPNQPNL QDIGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21169169MEF2C
5f28_B2e-21169169MEF2C
5f28_C2e-21169169MEF2C
5f28_D2e-21169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.267410.0cone
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression specific for female reproductive structures: strong at the adaxial base of the cupules, where ovules will later develop, then in the outermost cell layer of the nucellus, in the inner envelope, and in the inner half of the middle envelope at late stage of ovule development. {ECO:0000269|PubMed:11862488}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XGJ41e-56GGM13_GNEGN; MADS-box protein GGM13
TrEMBLQ9SED91e-153Q9SED9_PICAB; MADS-box transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-40MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]