PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012934
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25830.6 Da    PI: 9.901
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-10626PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.9e-28958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k+ien++ rqvtf+kR+ng+lKKA+ELS LCdaeva++ifs++g+lye++
  Pgl012934  9 KKIENTTSRQVTFCKRKNGLLKKASELSLLCDAEVALLIFSNSGRLYEFA 58
               68***********************************************8 PP
2K-box752e-25841691297
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                ++ +++q+e +kLk++ + L  ++R+l+Ge+L+sLs+keL+q+e  L+k+++++R kKne+ l +ie+l+++e  l  en+ Lr+k
  Pgl012934  84 TECNHWQKETRKLKQRRNILNDSIRQLMGECLDSLSMKELEQIEICLQKGISSVRWKKNEMQLGEIENLRRRECLLLAENRFLRSK 169
                56789******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.47E-40275No hitNo description
SuperFamilySSF554557.98E-31277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.62986177IPR002487Transcription factor, K-box
PfamPF014866.5E-2187169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKVQIKK IENTTSRQVT FCKRKNGLLK KASELSLLCD AEVALLIFSN SGRLYEFANN  60
SVKATIEKYI KTNEDNMQPA GDLTECNHWQ KETRKLKQRR NILNDSIRQL MGECLDSLSM  120
KELEQIEICL QKGISSVRWK KNEMQLGEIE NLRRRECLLL AENRFLRSKN FLQQNTVGEA  180
SSSHLDMQNF XSKRTLWGKL SNTHKLLLQL FKQLFNLDEA GDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-19176176Myocyte-specific enhancer factor 2B
1tqe_Q6e-19176176Myocyte-specific enhancer factor 2B
1tqe_R6e-19176176Myocyte-specific enhancer factor 2B
1tqe_S6e-19176176Myocyte-specific enhancer factor 2B
5f28_A6e-19176176MEF2C
5f28_B6e-19176176MEF2C
5f28_C6e-19176176MEF2C
5f28_D6e-19176176MEF2C
6c9l_A6e-19176176Myocyte-specific enhancer factor 2B
6c9l_B6e-19176176Myocyte-specific enhancer factor 2B
6c9l_C6e-19176176Myocyte-specific enhancer factor 2B
6c9l_D6e-19176176Myocyte-specific enhancer factor 2B
6c9l_E6e-19176176Myocyte-specific enhancer factor 2B
6c9l_F6e-19176176Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.236720.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at early stage of flower development in stamen anlagen before stamen initiation, and at later stage in lodicule and ovule primordia initiation region. {ECO:0000269|PubMed:10945340, ECO:0000269|PubMed:16326928}.
UniprotTISSUE SPECIFICITY: Expressed in lemmas, paleas and lodicules. {ECO:0000269|PubMed:10945340}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026392031.12e-61floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_026412851.12e-61floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_026412871.11e-61floral homeotic protein AGAMOUS-like isoform X5
SwissprotQ407041e-60MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A7A5S01e-125A0A0A7A5S0_PICAB; MADS-box protein (Fragment)
STRINGPavir.Ea00226.1.p4e-60(Panicum virgatum)
STRINGXP_010272685.12e-60(Nelumbo nucifera)
STRINGOBART01G06520.17e-60(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.12e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]