PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012518
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 241aa    MW: 27920.5 Da    PI: 5.7772
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346178PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-45168PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94.1e-091712042255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Pgl012518 171 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 204
                58*****************************885 PP
2ELK43.28.3e-15124145122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++LlrKYsgyL+sLkqEF+
  Pgl012518 124 ELKDHLLRKYSGYLSSLKQEFM 145
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.6E-272778IPR005541KNOX2
PfamPF037914.0E-253076IPR005541KNOX2
SMARTSM011882.0E-8124145IPR005539ELK domain
PROSITE profilePS5121311.575124144IPR005539ELK domain
PfamPF037899.0E-12124145IPR005539ELK domain
PROSITE profilePS5007112.082144207IPR001356Homeobox domain
SMARTSM003894.8E-12146211IPR001356Homeobox domain
SuperFamilySSF466891.11E-19146220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27149210IPR009057Homeodomain-like
PfamPF059201.1E-16164203IPR008422Homeobox KN domain
CDDcd000863.93E-11170208No hitNo description
PROSITE patternPS000270182205IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQIGAPPEVV ARLDALTHEY ENQQHRTTVS IGMDPELDQF MEAYCEMLTK YHEELTKPFK  60
EAMSFLKKIE AQLNSLSKGT IRISPSAEND EKTEGGASSE EVEDGSGGET DFQEVDHHAV  120
EDRELKDHLL RKYSGYLSSL KQEFMKKKKK GKLPKDARQK LLDWWTVHYK WPYPSETEKI  180
ALAECTGLDQ KQINNWFINQ RKRHWKPSED MQLMAMDGQS PHGATLYVER HLMTEGYHLD  240
C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.275980.0needle| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640348.11e-102homeobox protein knotted-1-like 2
SwissprotQ413302e-99KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA9NR061e-180A9NR06_PICSI; Uncharacterized protein
TrEMBLQ9ZR901e-179Q9ZR90_PICMA; Homeobox transcription factor SKN2
TrEMBLQ9ZTC01e-179Q9ZTC0_PICAB; Homeobox protein
STRINGVIT_18s0001g08380.t011e-101(Vitis vinifera)
STRINGXP_002510027.11e-102(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-87KNOTTED-like from Arabidopsis thaliana