PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl012169 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | C3H | ||||||||||||
Protein Properties | Length: 255aa MW: 28588.4 Da PI: 9.2032 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.6e-06 | 200 | 221 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr+f++ C + ++Ck+aH++ Pgl012169 200 VCRDFLK-NKCARNSSCKYAHPE 221 6******.*************96 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 233 | 252 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f+r G Ck+ ++C+F H+ Pgl012169 233 VCRDFQR-GKCKR-ESCRFYHS 252 7******.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.948 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 35 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.05 | 36 | 56 | No hit | No description |
SMART | SM00356 | 3.2 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.385 | 69 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-5 | 198 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 199 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 200 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.558 | 228 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0049 | 229 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.25 | 234 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
IRPSNIFLGP RGPPHPLPVL RSPSSVKNMT KPLVEICRDF VRGRCTREAD ECRYAHHAPT 60 AGEGDYVIVC SDHLRGKCER DSCRYFHAPE NLRSRIRDGA LGPAATLNSA HSNRGMDAAH 120 AFPSSFYDQQ VLKRMRTGDY AGDPHSWGIT PQSGAPNFHA PSMVGPSLIR PPLPLLQSST 180 LVPSPHLQSL EVNDEDRLQV CRDFLKNKCA RNSSCKYAHP EPHTKVVDNY VTVCRDFQRG 240 KCKRESCRFY HSSKK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5u6l_A | 9e-13 | 27 | 97 | 3 | 76 | Muscleblind-like protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.12195 | 0.0 | root |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A899 | 0.0 | D5A899_PICSI; Uncharacterized protein |