PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011788
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 272aa    MW: 29406.7 Da    PI: 7.9677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344872PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-20397PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07111136126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C+++ + G Ck+G  C+++H+
  Pgl011788 111 PGQPECQYYIKPGDCKFGFACRYHHP 136
                5789*********************8 PP
2zf-CCCH29.41.3e-09159183327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +++ +G+Ck+G++CkF H++
  Pgl011788 159 QPTCTYYSHYGICKFGPTCKFDHPM 183
                689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.32110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5114139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5154182IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4156183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033156184IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-7159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MIDGIYRASV PQQRPASGAR GHRVTDVRAD NWLPYHAGLN STKSAAESMK ESTTAETMNI  60
MYNSTQPNGL SVGGMQGLIT PFAQGSSSAV GHQPGHFQPN RTQTETYPER PGQPECQYYI  120
KPGDCKFGFA CRYHHPHERV SQSSTCVLSP IGLPLRPTQP TCTYYSHYGI CKFGPTCKFD  180
HPMAGLSCSP SASSLSEIPV APYPRGSSPT TTHIQSPSEP PLEIAKSRDQ PLREPTSSKQ  240
DPETVVSGNT RENVSTYSDA AIASRSAQSA LC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.16e-48zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.16e-48zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.16e-48zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373417.15e-48zinc finger CCCH domain-containing protein ZFN-like isoform X2
TrEMBLB8LMQ01e-140B8LMQ0_PICSI; Uncharacterized protein
STRINGPP1S102_155V6.12e-47(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-38C3H family protein