PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl011381

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 290aa MW: 33033.2 Da PI: 8.2563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55346952	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.9e-05	129	148	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pgl011381 129 FSCPVCAKTFNRYNNMQMHM 148 89*****************9 PP
2	zf-C2H2	12.2	0.00056	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F + + ++H +++ Pgl011381 214 FMCCKCNKTFAVRGDWRTHEKNC 236 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.58E-5	124	151	No hit	No description
PROSITE profile	PS50157	10.159	129	156	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.8E-6	129	148	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.14	129	151	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	131	151	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	177	209	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.62E-5	200	234	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-4	200	234	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	70	214	234	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
PSHASNDANI NDQSRVFFQQ LQQPLKGYCE SPPLREELPL LLSLSPPREK RSGEEKFRSD 60 PEENAMVSLQ IGPPNSLSEK SELTLKSTDS SDADKESILQ PRSEGRTRFS ESQYWIPTPS 120 QILIGATQFS CPVCAKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAI LLRLPCYCCT 180 QGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCCKCN KTFAVRGDWR THEKNCGKLW 240 YCSCGSDFKH KRSLKDHIRA FGQGHAPIAP DSFEDEEDLG SEDEVSVLSH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.23399	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246927.1	1e-121	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q8W031	1e-110	ZWIP5_ARATH; Zinc finger protein WIP5
Swissprot	Q9SVY1	1e-109	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A9NQR7	1e-169	A9NQR7_PICSI; Uncharacterized protein
STRING	XP_010246927.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]