PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010835

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 313aa MW: 35556.5 Da PI: 7.7357

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-32798	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143	1.7e-44	29	155	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 pGfrF Pt+eelv +yLkk+++g++ ++++ vi+++d+y+++P +Lp +++ +e++w+fF++rd+k+++ r+nr tksgyWkatg+d+++ ++ + + Pgl010835 29 PGFRFYPTEEELVGFYLKKRIQGSHpMNFDIVIPTLDLYRYDPCELPsLAHDVGERQWFFFVPRDHKNSS-GRPNRLTKSGYWKATGSDRAIRNELLQCI 127 9********************995666666***********556677999******9875.6*******************99999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkk+Lvfykg+ap g+ktdW+m+eyrl Pgl010835 128 GLKKILVFYKGKAPYGQKTDWIMNEYRL 155 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.61	27	176	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-47	28	176	IPR003441	NAC domain
Pfam	PF02365	7.5E-25	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
VQSQATRVND PSNKSPIGTV QEEFSMDLPG FRFYPTEEEL VGFYLKKRIQ GSHPMNFDIV 60 IPTLDLYRYD PCELPSLAHD VGERQWFFFV PRDHKNSSGR PNRLTKSGYW KATGSDRAIR 120 NELLQCIGLK KILVFYKGKA PYGQKTDWIM NEYRLPDLRS SSVKVRDIVL CRIYRKAASQ 180 KSMELQAKPD HVVKEETAVS GDEYEDTSYS TTLNDGGQLS NPMKEIEVSS LYYQKRERVC 240 SSDQSKTNNG DSLYECLEPI MLSEETRVLK NPKACKTALL ELPNMSLNCP LSQPIATPPA 300 LLSTPPPFQP SLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-46	29	181	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-46	29	181	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-46	29	181	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-46	29	181	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-46	29	181	22	173	NAC domain-containing protein 19
3swm_B	5e-46	29	181	22	173	NAC domain-containing protein 19
3swm_C	5e-46	29	181	22	173	NAC domain-containing protein 19
3swm_D	5e-46	29	181	22	173	NAC domain-containing protein 19
3swp_A	5e-46	29	181	22	173	NAC domain-containing protein 19
3swp_B	5e-46	29	181	22	173	NAC domain-containing protein 19
3swp_C	5e-46	29	181	22	173	NAC domain-containing protein 19
3swp_D	5e-46	29	181	22	173	NAC domain-containing protein 19
4dul_A	6e-46	29	181	19	170	NAC domain-containing protein 19
4dul_B	6e-46	29	181	19	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.18382	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813634.1	9e-64	NAC domain-containing protein 22-like isoform X1
Swissprot	Q10S65	2e-57	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-133	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008813634.1	4e-63	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	2e-58	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]