PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010808
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 314aa    MW: 34241.6 Da    PI: 9.9999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350120PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-1034PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.9e-1580165286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ +l+Li+a  e+  +l+rg+lk+++W+ev++++     + +  ++ +qCk++++ l+k+yk ++     +   s++++p+f++++
  Pgl010808  80 WSQSATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVngrpGSNKQPKTDVQCKNRLDTLKKKYKVERSKIFAG---STTKWPLFTKMD 165
                *************************************86655556666778**************999988875...6778*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-2479167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
XHHHGGGGTA EVVAGGNTGG GGGATNGLSL SLPLPLTMPG SSSAKLSASP PPPPPPPPQP  60
AGEPVEGDRV AAPGGRDDIW SQSATLTLID AWGERYLELN RGNLKQKHWK EVAEAVNGRP  120
GSNKQPKTDV QCKNRLDTLK KKYKVERSKI FAGSTTKWPL FTKMDELIGP ARKLHHHHPQ  180
PLPLPPPPPI RPRRHPIESS PNPLNTATSP DMTESCLNGF NGNPSSAKRR KTVAVTVDNP  240
DSSPLKELAG AILKFGEVYE RTEVVKHQQM IDLEKHRMEF AKDLELQRMQ LFVQTQLELA  300
KIKHANHGNT EHYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.139810.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531829.16e-77trihelix transcription factor ASIL2-like
TrEMBLA9NWZ60.0A9NWZ6_PICSI; Uncharacterized protein
STRINGEFJ278844e-73(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.17e-52sequence-specific DNA binding transcription factors