PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010493

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 337aa MW: 37765.8 Da PI: 9.5162

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55336244	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-1887	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.4e-52	14	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 lppGfrFhPtdeel+ +yLkkkv++++++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk+++ + + Pgl010493 14 LPPGFRFHPTDEELLIHYLKKKVSSSPIPG-SIIAEIDLYKHDPWDLPAKACFGEQEWYFFSPRDRKYPNGERPNRSAGSGYWKATGTDKPIVITsgstS 112 79**************************.89***********8777899**********************************9978877 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk+Lvfykgr kg kt+W+mheyrl Pgl010493 113 SQKVGVKKSLVFYKGRPLKGLKTNWIMHEYRL 144 888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	10	169	IPR003441	NAC domain
PROSITE profile	PS51005	60.593	14	169	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDGLAFHEQV LPQLPPGFRF HPTDEELLIH YLKKKVSSSP IPGSIIAEID LYKHDPWDLP 60 AKACFGEQEW YFFSPRDRKY PNGERPNRSA GSGYWKATGT DKPIVITSGS TSSQKVGVKK 120 SLVFYKGRPL KGLKTNWIMH EYRLAETLPT KRKGSLRLDD WVLCRIYKKV SHSPRVVSCP 180 ELEPLSPSPS ATDVQRTRQK SAMPKFGSFS RLLQSEGPSM EDFLSRATSD ANAALSHVEP 240 SSTLQVVPQK LNSSETRSHL SMTMGFNGDE VSSVHPAKRQ NTLNPSSSLQ LQSSNPYMAV 300 AAPDQHMYRL PINESWNPET PTWPLPTGNL WPAYDNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-75	14	175	20	174	NAC domain-containing protein 19
3swm_B	9e-75	14	175	20	174	NAC domain-containing protein 19
3swm_C	9e-75	14	175	20	174	NAC domain-containing protein 19
3swm_D	9e-75	14	175	20	174	NAC domain-containing protein 19
3swp_A	9e-75	14	175	20	174	NAC domain-containing protein 19
3swp_B	9e-75	14	175	20	174	NAC domain-containing protein 19
3swp_C	9e-75	14	175	20	174	NAC domain-containing protein 19
3swp_D	9e-75	14	175	20	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.24814	0.0	root\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284654.2	2e-89	PREDICTED: NAC transcription factor 56
TrEMBL	D5ABS0	1e-146	D5ABS0_PICSI; Uncharacterized protein
STRING	VIT_19s0014g03300.t01	9e-89	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-85	NAC domain containing protein 47