PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010232
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 358aa    MW: 39555.8 Da    PI: 9.3989
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55343109PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32486PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.1e-2585129145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Pgl010232  85 DPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVET 129
                79****************************************996 PP
2QLQ64.52.6e-221550237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FT++Q+q+L++Q+l++Ky++a+ PvPp+Ll +i+k
  Pgl010232 15 PFTPSQWQELEHQALIFKYMMAGIPVPPDLLIPIRK 50
               9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.4E-131450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.7061550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.9E-171549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.62485129IPR014977WRC domain
PfamPF088792.1E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNYHTGIQMH GARPPFTPSQ WQELEHQALI FKYMMAGIPV PPDLLIPIRK SLEAINAGLF  60
NHPHHIHPNI PWSTSFQLGF AKNCDPEPGR CRRTDGKKWR CSKDAFPDSK YCERHMHRGR  120
NRSRKPVETP ASHSSSLSLS TASARNNSIP SITNNTQSHV SFATPYSTSR LAGAGIGAPP  180
STANSNSTST NQFNTDAGSY SISSKDYRYM KGDIDEHVFF SSEVSGTSRG LGIDSPSMLS  240
SSVDSGWRSL MPSKMSPFSS QSSFPTDAAT KQQHSFLTSS FGGVQDQPVN VKIEQQPLRH  300
FFDEWPRSRD SSTLSWTELD EERSNRNSST TQLSISIPIT SSDFSGSSNS RSPTRGCK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.242560.0stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854210.11e-101growth-regulating factor 4
TrEMBLA0A0M3LA870.0A0A0M3LA87_9SPER; Growth regulating factor 1
STRINGERN156771e-100(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-46growth-regulating factor 5