PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010213
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 360aa    MW: 40609.4 Da    PI: 6.2856
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350388PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-41839PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.81.4e-9853602373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L++cAea+s+g++ l+ +++++l+e +sp gdp+qR+ +y+ e L+++ ++        ++ +e  e++s e   a+++f+++ P++kf h+t Nqa
  Pgl010213   5 LQILVKCAEALSEGHHGLVGSMVSKLQEFSSPFGDPLQRISFYVSEVLKKHSFS-------VVNQEEIYEESSLEYDLAYQAFYQLLPYHKFLHFTSNQA 97 
                689***********************************************9998.......45666666666999999********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                Ileav++++ +HiiD++i qG+QWp+++q+La Rp+gpp  l+iT++g+    ++++l++tg+rL +fAe++++ f f + ++ +le+l+ ++L+++ +E
  Pgl010213  98 ILEAVDNASNIHIIDLEIRQGFQWPSFIQSLALRPGGPPkLLKITAIGQ----DEKRLKQTGRRLLEFAESMEIAFAFYP-IVVDLENLDESALNIEAHE 192
                ***********************************9998689*******....9**************************.6888*************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                ++aVn+++ l +ll +s++++     +L l+++l+P v++v+e e++ + +s + rfl++l ++ a+f s+ea + r + +ri +Er++++++i+nv+ +
  Pgl010213 193 TIAVNCSVVLNKLLCQSGKIHG----LLALLRKLNPAVLTVMEIESNQSMPSTVGRFLQCLIFHRAVFSSIEAIIERSNPDRILIERVYVAPNISNVLVN 288
                **************99999999....*************************************************************************9 PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 + +   r     +Wr+ l+++GFk  pls++  +qa+lll ++++d ++++++  s++l W+d p+vsvSaW
  Pgl010213 289 DQGN-SLRYACIDSWRKFLRHSGFKDCPLSNYSKCQANLLLGMYSNDSFKLHQDGVSITLAWQDTPIVSVSAW 360
                9998.89****************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.0441341IPR005202Transcription factor GRAS
PfamPF035144.8E-965360IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
XKDLLQILVK CAEALSEGHH GLVGSMVSKL QEFSSPFGDP LQRISFYVSE VLKKHSFSVV  60
NQEEIYEESS LEYDLAYQAF YQLLPYHKFL HFTSNQAILE AVDNASNIHI IDLEIRQGFQ  120
WPSFIQSLAL RPGGPPKLLK ITAIGQDEKR LKQTGRRLLE FAESMEIAFA FYPIVVDLEN  180
LDESALNIEA HETIAVNCSV VLNKLLCQSG KIHGLLALLR KLNPAVLTVM EIESNQSMPS  240
TVGRFLQCLI FHRAVFSSIE AIIERSNPDR ILIERVYVAP NISNVLVNDQ GNSLRYACID  300
SWRKFLRHSG FKDCPLSNYS KCQANLLLGM YSNDSFKLHQ DGVSITLAWQ DTPIVSVSAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-631036025378Protein SCARECROW
5b3h_A3e-631036024377Protein SCARECROW
5b3h_D3e-631036024377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.88450.0cone| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B4U8Q01e-117A0A0B4U8Q0_PINRA; SCL11 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-62GRAS family protein