PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010104

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 370aa MW: 42456.3 Da PI: 7.3177

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55350286	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-3119	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	3.9e-53	12	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi++vd++k+ePwdL++ k+ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ + + Pgl010104 12 VPPGFRFHPTEEELLHYYLKKKVSYEKIDL-DVIRDVDLNKLEPWDLHErcKIGSaPQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDKAIRN-SY 109 69**************************.9***********862333333556*********************************9.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 + +g++ktLvfykgrap+g+ktdW+mheyrle Pgl010104 110 KRIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 141 99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-59	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	57.856	12	162	IPR003441	NAC domain
Pfam	PF02365	9.9E-28	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MTSLSVNGSS SVPPGFRFHP TEEELLHYYL KKKVSYEKID LDVIRDVDLN KLEPWDLHER 60 CKIGSAPQNE WYFFSHKDKK YPTGSRTNRA TAAGFWKATG RDKAIRNSYK RIGMRKTLVF 120 YKGRAPHGQK TDWIMHEYRL EDNDNSLHGH EDGWVVCRVF KKKNYLKGHD DNSDPGSSNL 180 DQENSAVLSE PKDCRGHGEV QYSQIQHHHH QQQQLLKHEL AAAGMQYSIL ESHHHDQLMQ 240 MARHLESQKL MNTAACNPPS PVSSGIKRLF PERGIEDGSK RIHYNHELPT GNGNGSSHVE 300 ITTQEQGHLN EIREGQVQLN DWSALDRLVA SHLNQVEESS KEIRYVDAMP SGDHISLPLR 360 SEIDLWNFGK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MTSLSVNGSS SVPPGFRFHP TEEELLHYYL KKKVSYEKID LDVIRDVDLN KLEPWDLHER  60
CKIGSAPQNE WYFFSHKDKK YPTGSRTNRA TAAGFWKATG RDKAIRNSYK RIGMRKTLVF  120
YKGRAPHGQK TDWIMHEYRL EDNDNSLHGH EDGWVVCRVF KKKNYLKGHD DNSDPGSSNL  180
DQENSAVLSE PKDCRGHGEV QYSQIQHHHH QQQQLLKHEL AAAGMQYSIL ESHHHDQLMQ  240
MARHLESQKL MNTAACNPPS PVSSGIKRLF PERGIEDGSK RIHYNHELPT GNGNGSSHVE  300
ITTQEQGHLN EIREGQVQLN DWSALDRLVA SHLNQVEESS KEIRYVDAMP SGDHISLPLR  360
SEIDLWNFGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	11	164	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.27711	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269\|PubMed:20197506}.
Uniprot	TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269\|PubMed:20197506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621045.1	1e-117	protein BEARSKIN2
Swissprot	Q9SV87	1e-102	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A345GNY9	1e-134	A0A345GNY9_CUNLA; NAC transcription factor 1 protein
STRING	ERM99762	1e-117	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-102	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]