PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl009884 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 393aa MW: 43890.4 Da PI: 4.9831 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.4e-09 | 322 | 354 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++++ LA+++gL ++q+ +WF N+R ++ Pgl009884 322 PYPSESQKIALAESTGLYQKQINNWFINQRKRH 354 8*****************************885 PP | |||||||
2 | ELK | 40.6 | 5.2e-14 | 274 | 295 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrKYsgyL+sLkqEF+ Pgl009884 274 ELKDQLLRKYSGYLSSLKQEFL 295 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.1E-18 | 97 | 141 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-21 | 98 | 140 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.4E-24 | 146 | 197 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.8E-23 | 149 | 196 | IPR005541 | KNOX2 |
Pfam | PF03789 | 6.3E-11 | 274 | 295 | IPR005539 | ELK domain |
SMART | SM01188 | 7.1E-8 | 274 | 295 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.592 | 274 | 294 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.325 | 294 | 357 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 296 | 370 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-12 | 296 | 361 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 299 | 359 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.83E-11 | 306 | 358 | No hit | No description |
Pfam | PF05920 | 8.0E-16 | 314 | 353 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
HFVMEQFIPE QAVISDSSIS SVKTEVCSGS GGTGVPGQFE LIRRKEEGRC ARAYAEPSFV 60 VTPLVTSLPP QQQEARMVTS LAVDMDSSCS CKPIEADAMK AKIIAHVHYP RLVAAYIDCQ 120 KVGAPPDVVS ELDELSQKCH AQQCVATISI GADPELDQFM EAYCEMFIKY QEELTKPFKE 180 AMAFLKKIEN QLGALTKGTI RTSSLDQGDE RGDGAASSEE DENQLGALTK GTIRTSSLDQ 240 GDERGDGAAS SEEEDGSGGE VEFHEVDPHA EDRELKDQLL RKYSGYLSSL KQEFLKKKKK 300 GKLPKEARQK LLDWWTRNYK WPYPSESQKI ALAESTGLYQ KQINNWFINQ RKRHWKPSEE 360 MQFVVMDSPN PHNAAFFLEG HLRTDGTAFS MDC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.6232 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vegetative meristem. Present in the base of flower primordia (PubMed:26390296). {ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:26390296, ECO:0000269|PubMed:7866029}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022870905.1 | 1e-103 | homeotic protein knotted-1 isoform X1 | ||||
Swissprot | P46639 | 1e-103 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | Q8GZN0 | 0.0 | Q8GZN0_PICAB; KNOTTED1-like homeodomain protein 2 (Fragment) | ||||
STRING | AT4G08150.1 | 1e-102 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-97 | KNOTTED-like from Arabidopsis thaliana |