PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009765
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 409aa    MW: 45165.3 Da    PI: 8.0816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-23116PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000112953331255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L++l+ +      +K + a++L +A+ YIk Lq
  Pgl009765 295 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 333
                677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-11293344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-6293337No hitNo description
SMARTSM003530.0053294338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8297340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
XSRALRQELV EPSDQLKKIQ QEVPLQGWEF RNMASFQGED IHLNPQQQAP LLYNLDDRLQ  60
SSNAHALPDL GRWSVAPPKQ PGHSLPRNIS LNAAYSNTPQ FDLSRIKQEY PGPYTSPDLG  120
VSLSSNTQLL QGFGIHAEPN FKNEGFCHIL ESATTKAFLK PTMAARGCHI TGDDYPGRWL  180
PNSSLSQMLP SSPSKQSVLN FGSMSKQVLD FSACKPDHLK AQQVSKTDCN LQYFPEGKQI  240
HGPAQHRTMP HGEEARDSSS DTKRNNSCTD QSTAEAIFKR PRLDTGSTLP TFKVRKEKLG  300
DRITALQQLV SPFGKTDTAS VLLEAIGYIK FLQDQVQVLS TPYLKSGGTS NPGSQDHKGW  360
GSSDKKDSDE PKQDLRSRGL CLVPVSCTLH VANDNGADYW TPSLGGTYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.13180.0root| somatic embryo
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-44bHLH family protein