PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl009693 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | TALE | ||||||||||||
Protein Properties | Length: 419aa MW: 47177.3 Da PI: 8.8175 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.4e-10 | 121 | 158 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Pgl009693 121 FEHflHPYPTDADKHMLARQTGLSRSQVSNWFINARVR 158 564459******************************88 PP | |||||||
2 | BELL | 88.9 | 5.3e-29 | 3 | 54 | 21 | 72 |
BELL 21 krYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rY qy+eq+++v+ sFe +aglg+a+pYt+lAlka+SrhF+cL+dai +q+ Pgl009693 3 RRYGQYCEQMKMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQL 54 8************************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 0.002 | 2 | 52 | IPR006563 | POX domain |
Pfam | PF07526 | 5.5E-24 | 2 | 50 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 99 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-10 | 102 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-12 | 102 | 163 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-18 | 104 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-29 | 105 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-19 | 119 | 158 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
XHRRYGQYCE QMKMVVTSFE SIAGLGAATP YTALALKAMS RHFKCLRDAI NNQLRVTSKA 60 LGEDSSLAGV SKGETPRLRF IDQNIRQQRA VQHLGMLEQH AWRPQRGLPE RSVSVLRAWL 120 FEHFLHPYPT DADKHMLARQ TGLSRSQVSN WFINARVRLW KPMVEEMYLQ ESKVSSEMDI 180 TLKRKENVSR DKTECLGSEK NMNKHGKMML DGGSDKQSAS EGGGSKFEHG GSTSQTGQES 240 SGTAMSMPLE SQFRPAEKVD GMREVDMSAN RNVRETQSLS SVNVATIGVD RRLEETPGCQ 300 NFDHSTKRFR NDDRNKIQGF ENTIDFSSYN HSSAIGGRYS HEDFTPRQFG SAGVSLTLGL 360 RHSGGQEKYS NGLYLSRDDS APDSNHHYNI HDSHDQGYGS GFDAQDMQFR KHVGSQLMH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 108 | 165 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 108 | 165 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.29547 | 0.0 | needle |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | Q7XA57 | 1e-156 | Q7XA57_GNEGN; Putative BEL1-like protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23760.3 | 3e-86 | BEL1-like homeodomain 4 |