PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl009620 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | G2-like | ||||||||||||
Protein Properties | Length: 430aa MW: 47769.5 Da PI: 6.6093 | ||||||||||||
Description | G2-like family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103 | 1.9e-32 | 29 | 83 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl Pgl009620 29 KPRLRWTAELHERFVEAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 83 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.771 | 26 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-30 | 27 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-15 | 28 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 29 | 84 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-9 | 31 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-26 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MESHSERPAM LQEISISTET GLVLSTDPKP RLRWTAELHE RFVEAVTKLG GPDKATPKAV 60 RTRMGVEGLT LYHLKSHLQK YRLGKQPHKE VNVDTSRDGL SHGGPVAGYG STACRVSEVP 120 VACNSVPSII PANITDTLQI TEALRMQMEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE 180 KARETLAGYN VGSIGLEATR AELSELASKV KSECFNSTFS ALTFSTMPEI PGLFPESQIA 240 RQQSQAADCS AYSCLTSNES SEKSPTENLQ AGGRKRPRSA YDNKVQFWQD DIREDMSLQE 300 LTGEENLSSP SSRTKDSSIV FHERATSDIV QAEENGNRLS DKKGKECEMN GVLVDPPITR 360 TLAFSSALSL QENSQMYEAT KVYTNQDKTR SKGYNKFSKM AQDLDLNSNG DTTVSSKERG 420 LDLNGYVWSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.30903 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8LAJ7 | 5e-70 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | C0PPV3 | 1e-102 | C0PPV3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 2e-72 | G2-like family protein |
Publications ? help Back to Top | |||
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