PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009336
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 474aa    MW: 52976.9 Da    PI: 5.0235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339867PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-7935PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09383425754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 +ErrRR+r+N+++  Lr+++P+ +      K++  ++L  ++eY k+L
  Pgl009336 383 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 425
                58*********************66......**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001802133IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF474591.7E-14375439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.602376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7383425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-13383437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDTSIYGPTC LSRAIAESPW DNNTNGQIDI PEYRVLQEVN GIALKDSNLE TANSVLNVIG  60
VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFDENSIR HGYCQSSKCF  120
KSESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK NQSLDLEKNC WERFSGQALQ  180
SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKSTIGQP YHGMSFNQYD EMEMNRRLFS  240
YTTENVTSTL LDEQRTSIEL FGIEGKKGIA AVSVNEPDGY EGEMLLSTSY KTEIYSDEQS  300
PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGDIE  360
SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE  420
YTKQLLHQIR FLQRELEPQT DWPALLEPIR ILSASGHGTE PKICRQTNSR GNPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384391ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.25e-10beta HLH protein 93