PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009332
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Dof
Protein Properties Length: 475aa    MW: 50149.9 Da    PI: 7.1875
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335226PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8717PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.6e-40100159261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk+s
  Pgl009332 100 PDKLLPCPRCQSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHS 159
                78999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3197157IPR003851Zinc finger, Dof-type
PfamPF027016.9E-33102158IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.947104158IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSKDCVIVCL SGDDRIHGHA DEKGFDPGFK LFGKTIPVRP VEEMKQEEPV SVQQPGAHKE  60
QSPEGEEEVQ QETGSSSEDG KDESMNEGKS GGQKTVLKKP DKLLPCPRCQ SMDTKFCYYN  120
NYNVNQPRHF CKNCQRYWTA GGTLRNVPVG AGRRKNKHSV AASTISSHYR QVISAASECG  180
LGVRTDDQES GVDQVMIPCA ALPASCVRPL KVAGSRIQVV PMDVLDSAAS TGTVLNFGSE  240
VRNKIHLGGD SDPSIEKSTM ESSSGSGKEA AGHMNPVAPR PQMDPPPNWA NGAAGAAYFG  300
GAWSYGWNFG NPAWNAAAAL PPGWPGSSWP MVPGSYFGPS PPPPPGWGPG PWVSGPWAAA  360
AAAASNNPTA AAFASNNPTA VDSGSPTLGK RPQSEDGCLW VPKTLRIDDP GEAAKSSIWT  420
TLGLGDKPES AITSGGIFKA FQPKTQGAKD SRKASQALQA NPAAFSRSIS FHESS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.12440.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ14DX90.0Q14DX9_PICAB; Dof domain zinc finger DNA-binding protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.19e-40cycling DOF factor 1