PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl009138

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HSF

Protein Properties

Length: 516aa MW: 57368.3 Da PI: 4.4288

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55339026	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-33188	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111	8.6e-35	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++ + +++++sws+ +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Pgl009138 16 FLTKTYDMVDGPVTDSIVSWSSGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKRLLKNIY 103 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pgl009138 104 RRKP 107 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.3E-39	6	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.31E-34	11	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.9E-61	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.2E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MDGSQTSSTN NAPPPFLTKT YDMVDGPVTD SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKRLLK NIYRRKPTHS HTQPQQQQGQ 120 SSSVGACVEV GKFGLEEEIE RLKRDKNVLM TELVRLRQQQ QSTDLQLQTV SQRLQGMEQR 180 QQQMMSFLAK AMQNPGFLAQ LVQQNENNMR IAATNKKRRL PKQEENSQDG QHGPPDGQIV 240 KYQPALSDAT KAFFMQIFNT ETSNKLEPSS NGLDNFSDVG RSSSEAIDNG NGSSMGRQSG 300 VTLTEMQGTS GFSDACVTSE ISDIQVSSTL SEMHCSAELP EIVASSGFPE MVVSSGLADM 360 HSFSNLAESI VAGTNLHTSQ FELPELQNTV TVNHNGSLPS EDYMQPKILR QDANSEPIAM 420 EMGLAIDGDR FSSEGDGDIL LDGEDLMPEI NDVFWEQFLA ESATSGGTEE AESAVQESFT 480 KDQDEKSSEN GNWWNKKQNM DNLTEQMGQL ASESNP

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MDGSQTSSTN NAPPPFLTKT YDMVDGPVTD SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKRLLK NIYRRKPTHS HTQPQQQQGQ  120
SSSVGACVEV GKFGLEEEIE RLKRDKNVLM TELVRLRQQQ QSTDLQLQTV SQRLQGMEQR  180
QQQMMSFLAK AMQNPGFLAQ LVQQNENNMR IAATNKKRRL PKQEENSQDG QHGPPDGQIV  240
KYQPALSDAT KAFFMQIFNT ETSNKLEPSS NGLDNFSDVG RSSSEAIDNG NGSSMGRQSG  300
VTLTEMQGTS GFSDACVTSE ISDIQVSSTL SEMHCSAELP EIVASSGFPE MVVSSGLADM  360
HSFSNLAESI VAGTNLHTSQ FELPELQNTV TVNHNGSLPS EDYMQPKILR QDANSEPIAM  420
EMGLAIDGDR FSSEGDGDIL LDGEDLMPEI NDVFWEQFLA ESATSGGTEE AESAVQESFT  480
KDQDEKSSEN GNWWNKKQNM DNLTEQMGQL ASESNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-26	14	105	18	120	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854048.2	0.0	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	1e-158	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	U5CZX6	0.0	U5CZX6_AMBTC; Uncharacterized protein
STRING	ERN15515	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-106	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]