PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009089
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 528aa    MW: 57102.2 Da    PI: 6.9779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347863PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19494PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-1085110227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++  C++++rtG C +G +C+F+H+p
  Pgl009089  85 GETDCPHYMRTGVCGFGMSCRFNHPP 110
                6789********************97 PP
2zf-CCCH33.66.6e-11131155327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++f +tGtCk+G++Ck++H++
  Pgl009089 131 DPECQHFVKTGTCKFGATCKYHHPK 155
                589********************96 PP
3zf-CCCH32.21.8e-10178201427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+++ +tG+Ck+G +CkF+H++
  Pgl009089 178 KECSHYVKTGQCKFGITCKFHHPQ 201
                68********************97 PP
4zf-CCCH39.11.2e-12343367327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+f++rtG+CkyG++Ck++H++
  Pgl009089 343 QPECQFYMRTGYCKYGSTCKYHHPR 367
                799********************96 PP
5zf-CCCH34.72.9e-11390413427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C+f+ar G+CkyG++CkF H++
  Pgl009089 390 PTCSFYARQGFCKYGPTCKFDHPM 413
                68********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.66683111IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-483110IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-785110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-587110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-489108IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249128156IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5133155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6173202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901174202IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5176201IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-8178201IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868340368IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10343367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6343369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5346368IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7386413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155386414IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8390413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5390416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4392411IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
IDPLTDDLPE AHGSCNSVFD FYELMEYYGN SSAMPRFLGS AVDPPPPDWN SQHVAADTGL  60
EDSMWHMNLQ SHDVTERGSY PERPGETDCP HYMRTGVCGF GMSCRFNHPP RRNIAAAVAR  120
NRGEYPERPG DPECQHFVKT GTCKFGATCK YHHPKYKPGT SDWPQLNALG YPLRLNEKEC  180
SHYVKTGQCK FGITCKFHHP QPAGPSVAIP GPSSYYPTGH SLSIPGPQPY AGGITTWPIP  240
RTPLMANTYL QGPSAYVPLM ISQGMMPVPG WNPFPAQVGS ITSRDVGQQA PGTGLFYGPR  300
YQTDGMNPSM QGPLASYLSR STSMGIPSTS TQMEHIFPER HGQPECQFYM RTGYCKYGST  360
CKYHHPRDRT VPLTSCALSP LGLPLRSGAP TCSFYARQGF CKYGPTCKFD HPMGTLSYSP  420
SASSLADMPV APYPVGSSPA TLAPSFSSTE LRAETAAGPF KESIATPETP LSSSAGEALD  480
LGAQGPVIST STGLSFSESE ENPLVKKSNQ VSVLANGIAK EGDIPISN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.109690.0needle| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.11e-151zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_010929825.11e-150zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.11e-151zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.11e-151zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.11e-151zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-137ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D6QVW30.0A0A0D6QVW3_ARACU; Uncharacterized protein
STRINGAquca_003_00828.11e-153(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein