PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl008405 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | ERF | ||||||||||||
Protein Properties | Length: 133aa MW: 14723.7 Da PI: 10.6427 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp + ++r++lg+f+taeeAa+a+++a+++l+g Pgl008405 31 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRG 81 589*******.**********743...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-14 | 31 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-29 | 31 | 88 | No hit | No description |
SMART | SM00380 | 1.9E-37 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 32 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.471 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MVVYAMQMAR VGVKMEIGGC EEEASSPVKE THFRGVRKRP WGRFAAEIRD PLKKTRVWLG 60 TFDTAEEAAR AYDNAARNLR GVKAKTNFLL SPHHDDSTKS SRSAALATLS SRSAVLLSNS 120 RTSAASVQIQ DQW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 29 | 90 | 2 | 64 | ATERF1 |
3gcc_A | 4e-22 | 29 | 90 | 2 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278126.1 | 1e-35 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | A9NMP1 | 4e-51 | A9NMP1_PICSI; Uncharacterized protein | ||||
STRING | XP_010278126.1 | 4e-35 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-24 | ERF domain protein 12 |