PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl007968 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||||||
Protein Properties | Length: 164aa MW: 18779.2 Da PI: 5.3665 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 73.6 | 3e-23 | 8 | 96 | 3 | 91 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d lP a +++i+k++lPa+ ++++da++++ ec +efi +++se++d c +e+++ti+++ +l +l lGf y+ ++k+ +++r Pgl007968 8 KEDVSLPKATMTKIIKEMLPAHVRVTRDAQDLLVECCVEFINLISSESNDICYKEEKRTIAPEHVLESLKILGFGSYIREVKAAYEQHR 96 57899****************************************************************************99877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-37 | 5 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.31E-32 | 9 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-19 | 12 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEIVGKAKED VSLPKATMTK IIKEMLPAHV RVTRDAQDLL VECCVEFINL ISSESNDICY 60 KEEKRTIAPE HVLESLKILG FGSYIREVKA AYEQHRIENW DCPRAGTRWS KNRLEMTEEE 120 ALLEQQRMFA EARARMNSGN NNFPGQLQSQ SQSQSQSQSQ SQSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-34 | 9 | 133 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.1816 | 0.0 | needle| root| stem| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832678.1 | 2e-75 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-69 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | D5A8I5 | 1e-115 | D5A8I5_PICSI; Uncharacterized protein | ||||
STRING | Migut.D01587.1.p | 8e-75 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 5e-72 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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