PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl007946 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 165aa MW: 19133.1 Da PI: 9.4967 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLC+aev ++ifs++ kl+e+++ Pgl007946 2 KRIENAISRQVTFSKRRNGLLKKAYELSVLCEAEVGLMIFSPREKLHEFAT 52 79***********************************************86 PP | |||||||
2 | K-box | 58.1 | 3.9e-20 | 73 | 149 | 8 | 83 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 ++e++ e+l++++a ++i +L++++R++lGe+L s+sl eL+qLe+q e++l++iR++K++ l+e+ l+kk Pgl007946 73 GtTKEHDIEYLKRQFADKAERITTLESTKRKMLGEELASCSLIELNQLESQAERGLRRIRARKEDCLREENAFLRKK 149 44788899*******************************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.62E-28 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-30 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.64E-36 | 1 | 65 | No hit | No description |
PROSITE profile | PS50066 | 27.502 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-24 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-16 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-16 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-15 | 75 | 149 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.959 | 80 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKRIENAISR QVTFSKRRNG LLKKAYELSV LCEAEVGLMI FSPREKLHEF ATPSMQKMLQ 60 KYEKYLQECD GNGTTKEHDI EYLKRQFADK AERITTLEST KRKMLGEELA SCSLIELNQL 120 ESQAERGLRR IRARKEDCLR EENAFLRKKC VSTPPSIGFG GIERI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-17 | 1 | 65 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 1 | 65 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 1 | 65 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 1 | 65 | 7 | 71 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 135 | RRIRARKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.24322 | 0.0 | stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Low expression in the young panicle continues to decline as the organ mature. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in mature leaves and at low levels in roots and young panicles. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027159621.1 | 5e-52 | MADS-box protein SOC1 isoform X2 | ||||
Swissprot | Q9XJ60 | 4e-47 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | B8LQC1 | 1e-113 | B8LQC1_PICSI; Uncharacterized protein | ||||
STRING | XP_010255589.1 | 3e-50 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 4e-48 | AGAMOUS-like 42 |