PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl007596

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 186aa MW: 20724 Da PI: 4.4845

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S25776048	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-2868	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	4e-16	23	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p++ r++++lg+++++e+Aa+a++ a +l+g Pgl007596 23 QFKGIRLRK-WGKWVSEIRMPNS---RAKIWLGSYDSPEKAARAYDFAVYCLRG 72 69***99.******933...5*******************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.6E-27	22	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.916	23	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-19	23	82	IPR016177	DNA-binding domain
CDD	cd00018	2.26E-26	23	82	No hit	No description
SMART	SM00380	4.0E-29	23	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-7	24	35	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-9	24	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-7	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MGKPLPKQST HRGPENSPSK SRQFKGIRLR KWGKWVSEIR MPNSRAKIWL GSYDSPEKAA 60 RAYDFAVYCL RGSKAAFNFP DSPPEIPCAS SLSPPQIQAA AARFATEDFR PPSEDDAASS 120 SSPSEAESCI DDQQISAEQG PAFWDSFLLE DLDSGESLNL EDFPPLYFSM DDFGVLFEQT 180 KDWGLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-13	19	80	1	63	ATERF1
3gcc_A	1e-13	19	80	1	63	ATERF1
5wx9_A	2e-13	13	80	4	72	Ethylene-responsive transcription factor ERF096
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.3673	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q84QC2	1e-37	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
Swissprot	Q9C591	3e-37	ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBL	A9NK16	1e-124	A9NK16_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	2e-39	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]