PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl007446 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GATA | ||||||||||||
Protein Properties | Length: 194aa MW: 21462.9 Da PI: 10.5746 | ||||||||||||
Description | GATA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.3 | 1.2e-14 | 106 | 142 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg + Tp++Rrgp g+++LCnaCGl+++ kg+ Pgl007446 106 CLHCGIGErlTPMMRRGPAGPRSLCNACGLMWANKGV 142 899*999999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 13.096 | 31 | 73 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.1E-17 | 31 | 73 | IPR010402 | CCT domain |
SMART | SM00401 | 2.6E-9 | 100 | 153 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-12 | 102 | 161 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-15 | 104 | 147 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.15E-11 | 105 | 148 | No hit | No description |
Pfam | PF00320 | 7.5E-13 | 106 | 142 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 106 | 133 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.735 | 116 | 156 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
XPPGLSGMPI HGHHHQKVLA DIPQRLNQPQ RIASLTRFRE KRKERCFDKK IRYSVRKEVA 60 LRMQRNKGQF TSTKSNPEDL GSSAAKWDPS QGWPPDSNGT QQEVVCLHCG IGERLTPMMR 120 RGPAGPRSLC NACGLMWANK GVLRDLSKTP SSLGSQNQPS SSHEQNDGRA GSHETEVGDR 180 NHIVSLPTNG HISS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.3938 | 0.0 | stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888995.1 | 2e-72 | GATA transcription factor 28-like | ||||
Refseq | XP_021888996.1 | 2e-72 | GATA transcription factor 28-like | ||||
Swissprot | Q8H1G0 | 3e-62 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A0C9RYG7 | 1e-111 | A0A0C9RYG7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3969_1829 transcribed RNA sequence | ||||
STRING | PP1S226_47V6.1 | 4e-68 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 5e-64 | ZIM-LIKE 2 |