PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl007322 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 201aa MW: 22929.7 Da PI: 9.2349 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 40 | 94 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Pgl007322 40 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 94 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.4 | 1.4e-41 | 40 | 129 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+een+rL+k+ +eLr +l Pgl007322 40 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYETLTEENRRLQKDIQELR-AL 129 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-18 | 26 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-19 | 33 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-16 | 38 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 40 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.84E-14 | 40 | 97 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.9E-11 | 96 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.4E-24 | 96 | 139 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
HATSAVKRER DGERDNNAND NELDRDCSRG SDEEEGGGTR KKLRLSKEQS AYLEESFKEH 60 NTLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCYE TLTEENRRLQ 120 KDIQELRALK VAHPSFYMHL PATTLTMCPS CERIASASAP PDSNAKGLHG HGHGYGHGPS 180 PWPTLASAHL RPTRPPPRLE Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 44 | TRKKLRL |
2 | 88 | 96 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849539.1 | 1e-79 | homeobox-leucine zipper protein HOX11 | ||||
Refseq | XP_010265939.1 | 1e-79 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | A2Z1U1 | 2e-77 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 1e-76 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A9NV75 | 1e-145 | A9NV75_PICSI; Uncharacterized protein | ||||
STRING | ERN11120 | 4e-79 | (Amborella trichopoda) | ||||
STRING | XP_010265939.1 | 5e-79 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-64 | homeobox from Arabidopsis thaliana |