PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007083
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 214aa    MW: 24476 Da    PI: 9.2976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337090PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8487PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-122264754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+ +L
  Pgl007083 22 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVDKL 64
               57*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-121369No hitNo description
PROSITE profilePS5088816.3041564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-171884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-162170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-172179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-102264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MELADERSIL RYKKPKLSKN VVSERRRRQK MNKLLYTLRA LVPNISKMDK ASILGDAIEY  60
VDKLKKQVER AESDVQSTNV SAQSADPRIE ETDSFTVRLD AANRYGSDRK YHVQVEAHVV  120
EESIVEVRIR CKQEHGILFH LTRALESLPF RLKNVTFSTL NEYLLLLNAV LQADHCFPAM  180
SDYGVRQSIE DSFGKQGLIL TSGNSSGPLW HELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1521741063Transcription factor MYC2
5gnj_B1e-1521741063Transcription factor MYC2
5gnj_E1e-1521741063Transcription factor MYC2
5gnj_F1e-1521741063Transcription factor MYC2
5gnj_G1e-1521741063Transcription factor MYC2
5gnj_I1e-1521741063Transcription factor MYC2
5gnj_M1e-1521741063Transcription factor MYC2
5gnj_N1e-1521741063Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166DKLKKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.43810.0cone| stem| vegetative bud
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.13e-20bHLH family protein