PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006727 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HSF | ||||||||||||
Protein Properties | Length: 228aa MW: 25775.1 Da PI: 8.6195 | ||||||||||||
Description | HSF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.4 | 9.8e-33 | 18 | 110 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sw +++n+fvv+ ++ef+ vLp yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+++ll++i+ Pgl006727 18 FLVKTYRLVDDPSTDHIVSWGDHKNTFVVWRPKEFSACVLPCYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANDLFRKGQTHLLSHIQ 105 9***************************************************************9988.........67****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Pgl006727 106 RRKPS 110 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.7E-50 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.98E-33 | 16 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.2E-36 | 16 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.9E-29 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGMDGSVRDA GRLVASPFLV KTYRLVDDPS TDHIVSWGDH KNTFVVWRPK EFSACVLPCY 60 FNHTNFSSFV RQLNTYGFRK IVRGRCEFAN DLFRKGQTHL LSHIQRRKPS STSTTQASQI 120 EYEKSSSSLI PYSLSTVQDS DVPAAAPSLS EENEILRRNN SLLLSEIARL QNICSRDFTL 180 FSRQNTRNPP SIDMDRSKVD NASPTSSMTE VAEEINMTPP KLFGVPLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-20 | 18 | 107 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-20 | 18 | 107 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-20 | 18 | 107 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.20966 | 0.0 | cone| stem| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020701812.2 | 5e-52 | heat stress transcription factor B-4b-like | ||||
TrEMBL | H9WK88 | 1e-83 | H9WK88_PINTA; Uncharacterized protein (Fragment) | ||||
STRING | GSMUA_Achr9P15370_001 | 9e-53 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 6e-52 | heat shock transcription factor B4 |