PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl006721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Dof | ||||||||
Protein Properties | Length: 228aa MW: 24488.4 Da PI: 7.5316 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 45.4 | 1.7e-14 | 2 | 30 | 34 | 62 |
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62 k+CrryWtkGG+lr vPvGgg+rkn k++ Pgl006721 2 KTCRRYWTKGGSLRSVPVGGGCRKNSKRN 30 89***********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-9 | 2 | 28 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-6 | 2 | 23 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
XKTCRRYWTK GGSLRSVPVG GGCRKNSKRN NSSNNNGKRS NGEACSSATG SDQLSPSLGG 60 VSNDCKYYNG DGEELIGINY VNSLRQVDHE AAFAGCSINS GVYGIQANDH QSSQSFQPYH 120 LPTALQSLQG SLIQAPNGFN QAANRGDLGL VQQQAAGAVS YDREAYHPYI NMSLDHSDGH 180 SRAPQQHKSN NIIENPPQGL VYEGGYWNGG VWPDLSAYGL SNINPNSM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5847 | 0.0 | root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NNI1 | 1e-163 | A9NNI1_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 9e-09 | Dof family protein |