PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl006566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26274.9 Da PI: 9.7138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 62 | 112 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+ + +g+WvAeIr p++ r r +lg+f+tae+Aa a+++a+ +l+ge Pgl006566 62 LYRGVRQSH-WGKWVAEIRLPRN---RSRLWLGTFDTAEQAALAYDRAAYRLRGE 112 59****988.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-31 | 61 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.589 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 62 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.1E-14 | 63 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
LQLLQRQGEI EKLQWLTSVV SAPKPKFGHK RDATNSLGLR PWPMKHACKQ GLRLCSNQPT 60 KLYRGVRQSH WGKWVAEIRL PRNRSRLWLG TFDTAEQAAL AYDRAAYRLR GEYARLNFPG 120 LKQQQQLSHV DAKLQAICER SSASTKPSHE GKLGHNSLNQ KISEVTPCKE KSPFEVKSEC 180 PEFSGGDNNP VFAAQNSDSA LPCKSMTDAV CNMPSISASA SALATTWTDV EEWIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 61 | 119 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 61 | 119 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 61 | 119 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.22400 | 0.0 | cone |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016433104.1 | 1e-44 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | J7H688 | 2e-45 | J7H688_PINTB; Transcription factor 2 | ||||
STRING | evm.model.supercontig_996.1 | 1e-43 | (Carica papaya) | ||||
STRING | XP_009616719.1 | 8e-44 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 6e-33 | ERF family protein |