PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006288 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 248aa MW: 28415.9 Da PI: 6.9343 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 106.1 | 2.5e-33 | 40 | 125 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evl+Li++r+ +e+r+ + k plWee+s +m++ g++rs+k+Ckekwen+nk+++k ke++kkr +e+ +tcpyf+ql+a Pgl006288 40 RWPKPEVLTLIKLRSGLEQRFHEPGPKSPLWEEISTAMASLGYNRSAKRCKEKWENINKYFRKAKESNKKR-PENAKTCPYFHQLDA 125 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.097 | 33 | 97 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0012 | 37 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.39E-29 | 39 | 104 | No hit | No description |
Pfam | PF13837 | 2.2E-23 | 39 | 126 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
XNNLNNPNNL NNPNADEDHQ VVVHHEDIKD LSSFDPNSKR WPKPEVLTLI KLRSGLEQRF 60 HEPGPKSPLW EEISTAMASL GYNRSAKRCK EKWENINKYF RKAKESNKKR PENAKTCPYF 120 HQLDALYKKR NLANRQNKIM EKDSMVNGND QKVEDQETEE LVEHEQPSGS NRENTHAHHS 180 HNQQGDHGAD ILAVMPSAQG EPHAYNHERT NPNSSSTTRD ASSFMAMVHK LTSDHPPEFN 240 MSTSSNTE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5220 | 0.0 | cone| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402443.1 | 3e-55 | trihelix transcription factor GTL1-like | ||||
Swissprot | Q39117 | 5e-42 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A176VWE5 | 3e-55 | A0A176VWE5_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W4G1 | 2e-55 | A0A2R6W4G1_MARPO; Uncharacterized protein | ||||
STRING | PP1S19_341V6.1 | 1e-54 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-45 | Trihelix family protein |