PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006000 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 261aa MW: 29994.8 Da PI: 9.0798 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Pgl006000 10 RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 109.8 | 2.9e-36 | 75 | 173 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++ +++++a++++qe++kLk ++e Lqr+qRhllGedL++L++keLqqLe+qLe +l + Rs+K++++l+qieel+++e+ l+e nk+L+kkl e Pgl006000 75 AMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALAHLRSRKTQVMLDQIEELRQRERLLHEVNKSLQKKLSE 173 556777799***************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.711 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.81E-48 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-34 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.9E-31 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.635 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRGRVQLRR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFASS 60 SMNKTLERYE KCSYAMQDTT GVSDREAQNW HQEVTKLKGK VELLQRSQRH LLGEDLGPLN 120 VKELQQLERQ LEVALAHLRS RKTQVMLDQI EELRQRERLL HEVNKSLQKK LSETEGRDVI 180 TGIEQTSNTN TGTNGPWDSS ITNTAYALSH PQQNSNASLH HVDCEPTLQI GYQPVPPESI 240 GPPHQPQHNQ TQNQYMQGWW V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 7e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 7e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 7e-24 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.6243 | 0.0 | cone |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development in the inner and outer integuments. Not detected in young panicles. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:19820190}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem. Highly expressed in lodicules. Expressed in palea and pistil. Weakly expressed in carpels, empty glumes and stamens. Not detected in lemmas. {ECO:0000269|PubMed:10444103, ECO:0000269|PubMed:19820190}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292762.1 | 1e-101 | MADS-box transcription factor 6 | ||||
Swissprot | Q6EU39 | 1e-91 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | Q40765 | 0.0 | Q40765_PICAB; Dal1 protein | ||||
STRING | XP_008797646.1 | 1e-100 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 6e-78 | MIKC_MADS family protein |