PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005962
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 263aa    MW: 30585.2 Da    PI: 9.6018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342550PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18223PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05933123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               ++Cp  dC+   s+ snLkrH ++H
  Pgl005962  9 FVCPkeDCKLQLSSMSNLKRHVKRH 33
               89**********************9 PP
2zf-C2H220.31.4e-065375121
               EEET..TTTEEESSHHHHHHHHH CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHir 21
               y+Cp   Cgk+F+++s L++H+ 
  Pgl005962 53 YPCPkpCCGKVFKSPSRLVKHLD 75
               89*******************86 PP
3zf-C2H219.33.1e-06144168223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+  +C  sF+rksnL++Hir  H
  Pgl005962 144 KCHfdNCLHSFTRKSNLNQHIRAvH 168
                7*********************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-5774No hitNo description
Gene3DG3DSA:3.30.160.608.9E-5733IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538938IPR007087Zinc finger, C2H2
SMARTSM003550.007933IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-44874IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00935378IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8035379IPR007087Zinc finger, C2H2
PROSITE patternPS0002805578IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-484106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1285110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087110IPR007087Zinc finger, C2H2
SMARTSM0035524113134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-6125165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.024143168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.902143173IPR007087Zinc finger, C2H2
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-8153197No hitNo description
Gene3DG3DSA:3.30.160.608.9E-5167197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035514174200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176200IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKHEGKLFV CPKEDCKLQL SSMSNLKRHV KRHGERGESW QSLNLQSREV KNYPCPKPCC  60
GKVFKSPSRL VKHLDDVHST TYVQVVCCEP GCLKYFTNAE ALREHVQQNH SRICCEVCGS  120
QQLKKQIKRH MRIHESQTCV ERIKCHFDNC LHSFTRKSNL NQHIRAVHLG LRPFKCRFHE  180
CEMSFSHKAV RDNHEKTGRH CYVQGDFLEE DAAFQSRPRG GRKRKMFTIN TLLKKRVACP  240
DRSSTVLDNG SSFLDWLTSS SRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216224RPRGGRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.53750.0needle| root| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-85PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-85PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-85PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-85PREDICTED: transcription factor IIIA
TrEMBLA0A2G5F7C61e-85A0A2G5F7C6_AQUCA; Uncharacterized protein
TrEMBLA0A2G5F7F32e-86A0A2G5F7F3_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.12e-86(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.16e-65transcription factor IIIA