PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 274aa    MW: 31470.6 Da    PI: 5.1227
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339615PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8283PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092112452155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yps++++  LA+++gL+++q+ +WF N+R ++
  Pgl005753 211 KWPYPSETDKVSLAESTGLDQKQINNWFINQRKRH 245
                679*****************************885 PP

2ELK36.69.9e-13165186122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK+qLlrKYsgy +sLkqEF+
  Pgl005753 165 ELKDQLLRKYSGYFSSLKQEFL 186
                9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-202266IPR005540KNOX1
PfamPF037902.5E-222365IPR005540KNOX1
SMARTSM012565.0E-2171122IPR005541KNOX2
PfamPF037911.4E-2175120IPR005541KNOX2
PfamPF037891.3E-10165186IPR005539ELK domain
SMARTSM011885.3E-7165186IPR005539ELK domain
PROSITE profilePS5121311.017165185IPR005539ELK domain
PROSITE profilePS5007112.552185248IPR001356Homeobox domain
SMARTSM003891.2E-12187252IPR001356Homeobox domain
SuperFamilySSF466893.46E-19187260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27190250IPR009057Homeodomain-like
CDDcd000869.87E-13197249No hitNo description
PfamPF059201.4E-17205244IPR008422Homeobox KN domain
PROSITE patternPS000270223246IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVTSLEVDID SACSSNPNDS IDTLKTKIAC HPHYPQLLAA YMDCQKIGAP PEVVTVLDEI  60
SQENQLGRHL ATMDIGVDPE LDQFMEAYCQ MLIKYHLELS KPFKEARTFL NKMEAQLNCL  120
SKGAIRSFPS GYCDEREDGG GSSEEEFSCG EIEVHEVDPR AEDRELKDQL LRKYSGYFSS  180
LKQEFLKKKK KGKLPKEARQ KLLEWWNVHY KWPYPSETDK VSLAESTGLD QKQINNWFIN  240
QRKRHWKPSE DMQFVVMDSL NPHGASFYMD GADC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.226950.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640348.11e-108homeobox protein knotted-1-like 2
SwissprotQ413301e-101KN1_SOLLC; Homeotic protein knotted-1
TrEMBLQ5SC620.0Q5SC62_PICMA; Homeobox transcription factor KN4
STRINGcassava4.1_010084m1e-105(Manihot esculenta)
STRINGXP_010245637.11e-105(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-92KNOTTED-like from Arabidopsis thaliana