PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl005753 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 274aa MW: 31470.6 Da PI: 5.1227 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 211 | 245 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Pgl005753 211 KWPYPSETDKVSLAESTGLDQKQINNWFINQRKRH 245 679*****************************885 PP | |||||||
2 | ELK | 36.6 | 9.9e-13 | 165 | 186 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrKYsgy +sLkqEF+ Pgl005753 165 ELKDQLLRKYSGYFSSLKQEFL 186 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.2E-20 | 22 | 66 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-22 | 23 | 65 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.0E-21 | 71 | 122 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-21 | 75 | 120 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.3E-10 | 165 | 186 | IPR005539 | ELK domain |
SMART | SM01188 | 5.3E-7 | 165 | 186 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.017 | 165 | 185 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.552 | 185 | 248 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 187 | 252 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.46E-19 | 187 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 190 | 250 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.87E-13 | 197 | 249 | No hit | No description |
Pfam | PF05920 | 1.4E-17 | 205 | 244 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 223 | 246 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVTSLEVDID SACSSNPNDS IDTLKTKIAC HPHYPQLLAA YMDCQKIGAP PEVVTVLDEI 60 SQENQLGRHL ATMDIGVDPE LDQFMEAYCQ MLIKYHLELS KPFKEARTFL NKMEAQLNCL 120 SKGAIRSFPS GYCDEREDGG GSSEEEFSCG EIEVHEVDPR AEDRELKDQL LRKYSGYFSS 180 LKQEFLKKKK KGKLPKEARQ KLLEWWNVHY KWPYPSETDK VSLAESTGLD QKQINNWFIN 240 QRKRHWKPSE DMQFVVMDSL NPHGASFYMD GADC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.22695 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021640348.1 | 1e-108 | homeobox protein knotted-1-like 2 | ||||
Swissprot | Q41330 | 1e-101 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | Q5SC62 | 0.0 | Q5SC62_PICMA; Homeobox transcription factor KN4 | ||||
STRING | cassava4.1_010084m | 1e-105 | (Manihot esculenta) | ||||
STRING | XP_010245637.1 | 1e-105 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-92 | KNOTTED-like from Arabidopsis thaliana |