PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 285aa    MW: 32843.8 Da    PI: 6.758
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342019PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10349267PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-082342672154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++e+++L +++gL+ +q+ +WF N+R +
  Pgl005488 234 KWPYPTEDEKTRLVQETGLQLKQINNWFINQRKR 267
                469*****************************87 PP

2ELK31.24.9e-11188209122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y++++ ++++E++
  Pgl005488 188 ELKHELKQGYRSRIEDIREEIL 209
                9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-171963IPR005540KNOX1
PfamPF037901.9E-152162IPR005540KNOX1
SMARTSM012561.1E-2174130IPR005541KNOX2
PfamPF037915.1E-1681129IPR005541KNOX2
PROSITE profilePS5121310.301188208IPR005539ELK domain
SMARTSM011880.0016188209IPR005539ELK domain
PfamPF037894.7E-5188209IPR005539ELK domain
PROSITE profilePS5007111.742208271IPR001356Homeobox domain
SuperFamilySSF466891.33E-16210275IPR009057Homeodomain-like
SMARTSM003894.7E-11210275IPR001356Homeobox domain
CDDcd000861.69E-10211270No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25215272IPR009057Homeodomain-like
PfamPF059209.3E-18228267IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
HHHDQQQQQQ ENHMVWQNSR LKADVLQHPL YDQLLAAHVA CLRIATPVDQ LPKIDAQLAQ  60
QHHVVAKYSV LGRNQLLTGE EKEELDRFLA QYVLLLSSFK EQLQQHVRVH AMEAVMACWE  120
LEQSLHTLTG VSPGEGTGAT MSDDEDDQAD SDTNLFDLGL DGQDGVGSFG PLIPTENERS  180
LMERVRQELK HELKQGYRSR IEDIREEILR KRRAGKLPGD TTSVLKNWWQ AHSKWPYPTE  240
DEKTRLVQET GLQLKQINNW FINQRKRNWH SNPSSSSASN AKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-13211275872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264284RKRNWHSNPSSSSASNAKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.22040.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.11e-160homeobox protein knotted-1-like 2
SwissprotP480001e-155KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3G6J9M70.0A0A3G6J9M7_PINTA; Homeobox protein knotted-1-like 3
STRINGXP_007136985.11e-159(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-145KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]