PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl005488 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 285aa MW: 32843.8 Da PI: 6.758 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 3.9e-08 | 234 | 267 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++e+++L +++gL+ +q+ +WF N+R + Pgl005488 234 KWPYPTEDEKTRLVQETGLQLKQINNWFINQRKR 267 469*****************************87 PP | |||||||
2 | ELK | 31.2 | 4.9e-11 | 188 | 209 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y++++ ++++E++ Pgl005488 188 ELKHELKQGYRSRIEDIREEIL 209 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.2E-17 | 19 | 63 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.9E-15 | 21 | 62 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-21 | 74 | 130 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.1E-16 | 81 | 129 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.301 | 188 | 208 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0016 | 188 | 209 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.7E-5 | 188 | 209 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 208 | 271 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-16 | 210 | 275 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 210 | 275 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-10 | 211 | 270 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 215 | 272 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.3E-18 | 228 | 267 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
HHHDQQQQQQ ENHMVWQNSR LKADVLQHPL YDQLLAAHVA CLRIATPVDQ LPKIDAQLAQ 60 QHHVVAKYSV LGRNQLLTGE EKEELDRFLA QYVLLLSSFK EQLQQHVRVH AMEAVMACWE 120 LEQSLHTLTG VSPGEGTGAT MSDDEDDQAD SDTNLFDLGL DGQDGVGSFG PLIPTENERS 180 LMERVRQELK HELKQGYRSR IEDIREEILR KRRAGKLPGD TTSVLKNWWQ AHSKWPYPTE 240 DEKTRLVQET GLQLKQINNW FINQRKRNWH SNPSSSSASN AKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 211 | 275 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 284 | RKRNWHSNPSSSSASNAKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.2204 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021862211.1 | 1e-160 | homeobox protein knotted-1-like 2 | ||||
Swissprot | P48000 | 1e-155 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A3G6J9M7 | 0.0 | A0A3G6J9M7_PINTA; Homeobox protein knotted-1-like 3 | ||||
STRING | XP_007136985.1 | 1e-159 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-145 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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