PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005464
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 287aa    MW: 32437.3 Da    PI: 8.5573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345255PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-9677PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.4e-34461891128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk.sgyW 83 
                lp G++F+Ptd+el+ e+L+ kv+ ++      ++++   i    +i++++P++Lp  ++ +    +fF++ +k+y+tg+rk+r+        t+ + +W
  Pgl005464  46 LPYGVKFDPTDQELI-EHLQGKVAFDNsaahplIDEFIPtIGGEdGICYTHPEKLP-GISRDGLIRHFFHRPSKAYTTGTRKRRKiqtacdesTEgETRW 143
                699************.99****998886665443332223554436**********.555555677******************867777776334778* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++vl+ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pgl005464 144 HKTGKTRPVLV-NGKQKGCKKILVLYtnFGKHKKPEKTNWVMHQYHL 189
                ***********.999***********554799999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-3933208IPR003441NAC domain
PROSITE profilePS5100533.1946208IPR003441NAC domain
PfamPF023657.6E-1647189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAGKIRNSTS SSQLIDAKLE EYRIKRCPAC GHQIERREAL QDWPGLPYGV KFDPTDQELI  60
EHLQGKVAFD NSAAHPLIDE FIPTIGGEDG ICYTHPEKLP GISRDGLIRH FFHRPSKAYT  120
TGTRKRRKIQ TACDESTEGE TRWHKTGKTR PVLVNGKQKG CKKILVLYTN FGKHKKPEKT  180
NWVMHQYHLG SQEEEKEGEL VVSKIFYQTQ PRQCNWEKAT YAGDACRASV TEATQVSERC  240
TAGESVSSTA RHTYNHLEQQ TKGTHSSHNL SLAQSRLESS DQVSISE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.213330.0needle| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321139.11e-122NAC domain-containing protein 75 isoform X2
RefseqXP_015074957.11e-122NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-122NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA11e-150E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGPGSC0003DMT4000435211e-121(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-124NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]