PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005458
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 287aa    MW: 31181.5 Da    PI: 5.4875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336455PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-35040PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l  +v+++G g W+tI +          R+  ++k++w++
        Pgl005458  5 KQKWTSEEEGALRAGVEKYGAGKWRTIQKDPEfgrclAARSNVDLKDKWRN 55
                     79****************************9999***99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.183161IPR017930Myb domain
SuperFamilySSF466892.11E-15258IPR009057Homeodomain-like
SMARTSM007179.5E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-14556IPR009057Homeodomain-like
PfamPF002492.4E-7555IPR001005SANT/Myb domain
CDDcd116601.14E-21656No hitNo description
SMARTSM005261.2E-8116181IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-9116186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.99E-12117186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.493118186IPR005818Linker histone H1/H5, domain H15
PfamPF005382.4E-7120184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGAPKQKWTS EEEGALRAGV EKYGAGKWRT IQKDPEFGRC LAARSNVDLK DKWRNMSVSA  60
GGQGSRDKVK TPRVKAIASL PYSSVTAEST TVFSIEATPS TTPDNLISPK SSSNGKNHSP  120
RYDGMILEAL TIMQDPNGID IATIASFMEE RHELPTNFKR MLGPKLKRLV AGKKVMKIHN  180
SYKLKDMPST TEVISEVLGS PIPMDNSMQY SSAFSNTMDT FSVDRINEAS MAAAMKVADA  240
EAMSAMADKA AEESELAAIL ADESDMLFEA ASVVFEQLLQ DGVLVLS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.40640.0cone| somatic embryo| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QZP21e-108A0A0D6QZP2_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.29e-51MYB_related family protein