PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004553
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YA
Protein Properties Length: 333aa    MW: 35915.9 Da    PI: 7.1763
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-611PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.93.4e-33149205158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                dep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  Pgl004553 149 DEPVYVNAKQYHGILRRRQSRAKAELENKL-IKVRKPYLHESRHLHAMRRARGCGGRF 205
                79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-37147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.68148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-28150205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-24151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-24182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTNAGSYNLL TACFVDRSNA LDPSLKEAAA QSQQLQVLAQ LQQSGGGGMN KGMTRMQLSP  60
TKSGYGGTIA NGQHHQPHVT STLLSTSPEY NVPHTQLELG HSIAHAAYPC TDPYIGAIVD  120
AYGDHAMNHS HILGFQQGRM PLPSDVIEDE PVYVNAKQYH GILRRRQSRA KAELENKLIK  180
VRKPYLHESR HLHAMRRARG CGGRFLNTKL LETTKVNADS GKLTEGQHAW AVSSSSTEAL  240
QSENGNMNSS EVHGNSGLSG SEVTSMSESC PDGTSYSYTQ GNGGYLYHHA SSHFHLLGFS  300
PLSDGSGEVE SGQGMGYGIK WIAAESCCDP MKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19149209262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380415.15e-68nuclear transcription factor Y subunit A-7-like
RefseqXP_024380416.15e-68nuclear transcription factor Y subunit A-7-like
TrEMBLA0A0D6QWS41e-130A0A0D6QWS4_ARACU; Uncharacterized protein
STRINGPP1S42_174V6.12e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-42nuclear factor Y, subunit A7