PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004464
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 337aa    MW: 36097.9 Da    PI: 9.154
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351504PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32538PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-067295225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k + C  f+ t  C++G++C+F+H
  Pgl004464 72 KSKACTKFFSTSGCPFGENCHFMH 95
               6678******************** PP
2zf-CCCH25.91.7e-08140166127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt++C+++     C++Gd+C+FaH++
  Pgl004464 140 YKTRICNRYGTAEGCRFGDKCHFAHSE 166
                9************************95 PP
3zf-CCCH37.54e-12308332126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+ C +f++ GtC +GdrC+FaHg
  Pgl004464 308 YKTKVCENFSQ-GTCTFGDRCHFAHG 332
                9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.1E-86695IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-67096IPR000571Zinc finger, CCCH-type
SMARTSM003560.487097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2497098IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-57295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-9137170IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286139167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-14139170IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.77E-15212292IPR004088K Homology domain, type 1
SMARTSM003225.1E-10221291IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.0E-14222291IPR004088K Homology domain, type 1
PROSITE profilePS5008413.984222286IPR004088K Homology domain, type 1
PfamPF000135.9E-11224287IPR004088K Homology domain, type 1
CDDcd001051.24E-12226287No hitNo description
SuperFamilySSF902297.72E-9305337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-16306337IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-8307333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.859307334IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9308332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDPFGPPRKK LRPDVEFVNG NGGIHTHTRT LTDVGTRGFN PPDIMYGDPA RFKQPPIVHP  60
EMESLPTGLR SKSKACTKFF STSGCPFGEN CHFMHYNPGG MNLISQVSNL GSGLGTASRK  120
STGPPTSILP SDQAAPVQPY KTRICNRYGT AEGCRFGDKC HFAHSENELK KGNTLAPVER  180
ERTLSSYGRP VPGVMDGRPG GRLVQREPTP PGMAAAASFG ASATAKISVD ASLAGAIIGK  240
GGVNSKQICH TTGAKLAIRD HESDSNLKNI ELEGSFDQIK LASTMVHELI MQTSAVAAKP  300
SGFVFNNYKT KVCENFSQGT CTFGDRCHFA HGASELR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.126000.0stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-111PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9P2810.0A9P281_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-110(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-52C3H family protein