PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004252
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 348aa    MW: 39122.4 Da    PI: 9.0676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332448PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34011PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-175297147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
        Pgl004252 52 RGHWRPAEDAKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 97
                     899*****************************.***********996 PP
2Myb_DNA-binding55.81e-17104147146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Pgl004252 104 RKPFSEEEEDRLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 147
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7024798IPR017930Myb domain
SMARTSM007171.2E-1451100IPR001005SANT/Myb domain
PfamPF002493.3E-165297IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-2852145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-2753105IPR009057Homeodomain-like
CDDcd001672.92E-135596No hitNo description
PROSITE profilePS5129426.66199153IPR017930Myb domain
SMARTSM007172.5E-15103151IPR001005SANT/Myb domain
PfamPF002491.6E-14104146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-21106153IPR009057Homeodomain-like
CDDcd001671.35E-11106146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
XPQNNDDDTN GENCYGQDHY MKANDAMGSE EVLENSTGKE LPDSGQSKLC ARGHWRPAED  60
AKLKELVAQY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRKPFSEE EEDRLLAAHR  120
LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKLREQSSAY RRRKPQVVQQ RREKNDACIN  180
EPNSHYQFTS IPGGSSSSIN FLQPSRGFSS LSSADFSLAS SHTRIPSYYA IKSASAFGAV  240
QSLDYFSGAK GTANLPVERR SLLDKFPIPE QQAANGKACF HFMRPAINAT DPKLGLERHY  300
MDAEKASSVL SATDSSQEYS KSWIFNKSAE KDISTNRPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32521537108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.125820.0somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937176.13e-87transcription factor CSA
TrEMBLA0A222UAI81e-123A0A222UAI8_GINBI; R2R3MYB19
STRINGXP_010258320.17e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-70myb domain protein 105