PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004203
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 351aa    MW: 38911.8 Da    PI: 6.7724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333661PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-39665PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15278314135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cgt +  Tp++Rrgp g++tLCnaCGl ++ kg+
  Pgl004203 278 CLHCGTGErsTPMMRRGPVGPRTLCNACGLVWANKGV 314
                99****9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.43134169IPR010399Tify domain
SMARTSM009795.9E-10134169IPR010399Tify domain
PfamPF062004.0E-12136168IPR010399Tify domain
PfamPF062033.2E-16202243IPR010402CCT domain
PROSITE profilePS5101713.106202244IPR010402CCT domain
SMARTSM004014.6E-12272325IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.328272328IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-12274327No hitNo description
CDDcd002027.92E-14277320No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15277319IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440278305IPR000679Zinc finger, GATA-type
PfamPF003202.6E-13278314IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSDTDNLDPE SRVIHNHHQH RSFYPDRQAP IHAVNAHAHV AAHHVPMHGI LMQGQNEGDP  60
HRHQGAQFQG VDSGHMHIHY MHSDEHGHPL HHSNDNGAGE EQDEGDGDNN CMEEAGVQSD  120
GDNLGEPQSV VPVRSQGTNQ LTLSYQGEVY VFDMVAPEKV QQVLLLLGGR EIPNSMAGMP  180
IASLHHQKGL SDVSHRLNQP QRLASLTRFR EKRKERCFDK KIRYTVRKEV AQRMQRNKGQ  240
FTSYKADSKD LISAGHKWDP SEGGWTPNTN GTQQEAVCLH CGTGERSTPM MRRGPVGPRT  300
LCNACGLVWA NKGVLRDLSK STTSLGSQEQ SQSSHEQNDG GPGSQETERG E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.4110.0root| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845784.12e-99GATA transcription factor 24
RefseqXP_020523606.12e-99GATA transcription factor 24
SwissprotQ8H1G06e-80GAT28_ARATH; GATA transcription factor 28
TrEMBLD5AC320.0D5AC32_PICSI; Uncharacterized protein
STRINGERN074598e-99(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-78ZIM-LIKE 2