PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004136

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 354aa MW: 40677.7 Da PI: 6.73

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55350152	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-4231	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.3e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kkv++k+++l +vik++d+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k Pgl004136 7 VPPGFRFHPTDEELVDYYLRKKVAAKRIDL-DVIKDIDLYKIEPWDLQEkcKIGSeEQTEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYC-KL 104 69**************************.9***********952444442455**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l+g++ktLvfykgrap+g+k+dW+mheyrle Pgl004136 105 NLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 9***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	7	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNTLSRVPPG FRFHPTDEEL VDYYLRKKVA AKRIDLDVIK DIDLYKIEPW DLQEKCKIGS 60 EEQTEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YCKLNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN ATPQEEGWVV CRVFKKRITT QRKGNDDTVC WYEDQVGLLP 180 ELDSPKKLPQ GGDMGYQLPF ACKQELELHY HMSHDSFLQL PQLESPKVPC NASSSASGKR 240 AECSMPYNGL KTGCNMEGHH GNANPQSAAT QEDQHAVNTY NEEQVTDWRV LDKFVASQLS 300 QEDVSKDARF PNETMYPIPD HMTVLLRQSN KHEQQGDYAS NSNCDVDLWS FAGK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNTLSRVPPG FRFHPTDEEL VDYYLRKKVA AKRIDLDVIK DIDLYKIEPW DLQEKCKIGS  60
EEQTEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YCKLNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN ATPQEEGWVV CRVFKKRITT QRKGNDDTVC WYEDQVGLLP  180
ELDSPKKLPQ GGDMGYQLPF ACKQELELHY HMSHDSFLQL PQLESPKVPC NASSSASGKR  240
AECSMPYNGL KTGCNMEGHH GNANPQSAAT QEDQHAVNTY NEEQVTDWRV LDKFVASQLS  300
QEDVSKDARF PNETMYPIPD HMTVLLRQSN KHEQQGDYAS NSNCDVDLWS FAGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	7	162	17	171	NO APICAL MERISTEM PROTEIN
3ulx_A	1e-50	7	157	15	169	Stress-induced transcription factor NAC1
4dul_A	1e-50	7	162	17	171	NAC domain-containing protein 19
4dul_B	1e-50	7	162	17	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.1390	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:18445131, ECO:0000269\|PubMed:25148240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264210.1	1e-172	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-129	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U8AN73	1e-171	A0A1U8AN73_NELNU; NAC domain-containing protein 7
STRING	XP_010264210.1	1e-172	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-121	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]