PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003974
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 362aa    MW: 40117.5 Da    PI: 10.4579
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346950PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.82.8e-26244325371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   + +k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  Pgl003974 244 GRGLRQFSMK---VSQKVESkGRTTYNEVADELVAEyanldstlvspdrqqyDEKNIRRRVYDALNVLMAMEIISK-EKKEIQWKG 325
                689*******...99999999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-43238330IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-30242325IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-24245325IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-20245326IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
XPEEPNCRFR LKKENTEAVR NLKGTLVNGR VSLISRALWR ADGILRAFGG YLGGWRKHHY  60
NMLPRGSTRR ATGPRSGIRN RRAAAQSVVS TSPHNNNSLR KDIISEFHEA SIQKYAEGFG  120
ITQNGTNTEG FGITQNGTNT NGMKVDENKS TPQLGEGEYP SNATAGRCSG TSACAPRQSI  180
SVESGSAGSP SRGSDAAIAT PSRNNHIARV QHLDIHQEDL DSPETAGTRK RKRVPRVNGG  240
EKGGRGLRQF SMKVSQKVES KGRTTYNEVA DELVAEYANL DSTLVSPDRQ QYDEKNIRRR  300
VYDALNVLMA MEIISKEKKE IQWKGLPKTS INDVEQLKGK YLIIQRCLQA EKLLWTNMKG  360
NX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-35236330193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079068.12e-68LOW QUALITY PROTEIN: transcription factor-like protein DPB
TrEMBLA0A0D6QZS21e-104A0A0D6QZS2_ARACU; Uncharacterized protein
STRINGERN041116e-68(Amborella trichopoda)
STRINGXP_010241817.19e-68(Nelumbo nucifera)