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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||||||
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| TF ID | Pgl003947 | ||||||||||||
| Organism | |||||||||||||
| Taxonomic ID | |||||||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | G2-like | ||||||||||||
| Protein Properties | Length: 364aa MW: 41704.8 Da PI: 5.9915 | ||||||||||||
| Description | G2-like family protein | ||||||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 92.3 | 4e-29 | 1 | 53 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
rlrWt+ LH++Fv+av++LGG++kA+Pk il++m++kgLtl+hvkSHLQ YR+
Pgl003947 1 RLRWTTHLHNCFVNAVKRLGGQDKAIPKLILQFMGIKGLTLSHVKSHLQVYRS 53
89**************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 12.449 | 1 | 56 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.67E-13 | 1 | 55 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.6E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 1 | 54 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.2E-22 | 1 | 53 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 364 aa Download sequence Send to blast |
RLRWTTHLHN CFVNAVKRLG GQDKAIPKLI LQFMGIKGLT LSHVKSHLQV YRSVKNDENI 60 RLESEPKMIE MILDMEHSQN AQNNLGRDSE IGFFHSILNQ SPIVNGYSCR SSSCTEEETN 120 NSDKQWPEAT SARIRHRPAD RLHEAWNIEG NASPTVLLGS VDAAVAEPCF MQRIDDILHL 180 NHTLHCWTEL GRFAQQSCHE VKYWDEGDQD IEVLDHHKGQ VSRLFADSCD SNPSQTRTGG 240 DSRTFLPDLQ VERKDELTMG AVQRCTDQSD EHYLNLEIDI RNERRPTELQ LIESFCQGMR 300 KVEEMNIIIP PENIKTVSTI NGAEYNRSRT YEQTKISPEM VSFTREPRND IKLDLTMSVS 360 AGKF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 7e-15 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 7e-15 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 7e-15 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 7e-15 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-15 | 1 | 55 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G40260.1 | 2e-21 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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