PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003946
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 364aa    MW: 39361.3 Da    PI: 9.5976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342772PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-3731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08167193127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC+++  +  C++Gd+C+FaHg+
  Pgl003946 167 FKTRLCNRYGTNEGCQFGDKCHFAHGE 193
                69*********99************96 PP
2zf-CCCH38.22.3e-12330353226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kt+lC ++a+ GtC +GdrC+FaHg
  Pgl003946 330 KTKLCENYAK-GTCTFGDRCNFAHG 353
                9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.197124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.86897125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-598124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-699122IPR000571Zinc finger, CCCH-type
PfamPF146081.8105122No hitNo description
PROSITE profilePS5010313.366166194IPR000571Zinc finger, CCCH-type
SMARTSM003560.019166193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-13167197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8167197IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5167193IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-13240318IPR004088K Homology domain, type 1
SMARTSM003221.7E-7245315IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.0E-12245314IPR004088K Homology domain, type 1
PROSITE profilePS5008412.328246310IPR004088K Homology domain, type 1
CDDcd001051.79E-10248310No hitNo description
PfamPF000133.5E-9248312IPR004088K Homology domain, type 1
SuperFamilySSF902299.16E-9327358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14327358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.075328355IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-8328354IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10330353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
TGHSNENKVK TRAREGFSNV PGARCCYCYC YLSTFRGVPA SRRNREQRDR KGSSVKSAGE  60
RSSMDPRKKP KTQLHPNDNG DANPNSTEKE SISTALGSKS KACIKFFSTS GCPFGEGCHY  120
LHYVPGGVNA IPPIPTLGNT FGAASRKAIG FTPSVPPLDK PDPGLGFKTR LCNRYGTNEG  180
CQFGDKCHFA HGEKELRKGN VLAKDLDRER IAGPYSSMAA SGVDSGHSLY RDPPPGTAAA  240
ANFGASSTAK ISIDASLASC IIGKGGVNTK QIFRITGTKM FIKENESNPN LKNIELESSF  300
DQIKQATAMV RELIMHNEIQ SAKPYVQNRK TKLCENYAKG TCTFGDRCNF AHGANELREQ  360
SAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571PRKKPKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.29100.0needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.13e-98PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-86C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9NU060.0A9NU06_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-43C3H family protein