PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003923
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 365aa    MW: 39586.2 Da    PI: 8.5535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350144PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-21487PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08219724
               SGGGGTS--TTTTT-SS- CS
    zf-CCCH  7 rffartGtCkyGdrCkFa 24
               ++f++tG CkyG++Ck++
  Pgl003923  2 KHFMKTGVCKYGATCKYH 19
               69**************97 PP
2zf-CCCH40.54.7e-134166227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++++C++++rtG CkyG  CkF+H++
  Pgl003923 41 GEKECPYYMRTGSCKYGVACKFHHSE 66
               6789********************95 PP
3zf-CCCH27.36e-09214239227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C+++++tG CkyG +C+++H++
  Pgl003923 214 DQPQCQHYMKTGCCKYGTTCRYHHPK 239
                6789********************96 PP
4zf-CCCH31.72.6e-10259284126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C+f++r+G+Ck+G+ CkF H+
  Pgl003923 259 PGQPTCPFYSRYGICKFGPICKFDHS 284
                57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035624121IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.596123IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5219IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-63966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-63967IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7183967IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-114166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-64566IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072212239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234212240IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6214239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6215241IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967258286IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
XKHFMKTGVC KYGATCKYHP PRDRDGSKVQ LNYLGLPMRQ GEKECPYYMR TGSCKYGVAC  60
KFHHSEPTAL LPDSGSPGYA AAELSLSPAS GSTYPAGLAS RSLQRAPYVS GPCLQGSPTY  120
MPVILSPQQS TPSVQPGWST YHGPISPLSS PEGKRQLGTG TVYSSSYMTG SSSSRHMRGA  180
LSPPVQGSST AMEHPGVQSQ VSAPQREAFP ERPDQPQCQH YMKTGCCKYG TTCRYHHPKE  240
RVALSPWCMF SSQGLPLRPG QPTCPFYSRY GICKFGPICK FDHSLTGPNC NPAAFSPSEL  300
QTTLYPKGDS SEALFRSTSE EFSERVLKAT DQYAKDEELS SFKLQSTEEG SGDTLAAKSP  360
STSAI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.88850.0cone| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.12e-88PREDICTED: zinc finger CCCH domain-containing protein 3
RefseqXP_010270054.14e-89PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
TrEMBLB8LMU30.0B8LMU3_PICSI; Uncharacterized protein
STRINGXP_010252578.17e-88(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-61C3H family protein