PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl003891 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||||||
Protein Properties | Length: 367aa MW: 39423.6 Da PI: 8.2037 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.1e-08 | 6 | 23 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 ++tG+Ck+G++CkF H++ Pgl003891 6 MKTGICKFGSKCKFRHPK 23 89**************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff +tG+CkyG++CkF H++ Pgl003891 54 PGEPECAFFVKTGICKYGAKCKFDHPK 80 5799*********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.7e-11 | 138 | 163 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG Ck+G++C+++H+ Pgl003891 138 PGEPDCPFYVKTGSCKFGSNCRYNHP 163 5789*********************9 PP | |||||||
4 | zf-CCCH | 37.3 | 4.7e-12 | 205 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f+ +tG+Ck+G++CkF+H+ Pgl003891 205 PGEPECTFYIKTGECKFGPSCKFHHP 230 5799*********************9 PP | |||||||
5 | zf-CCCH | 39.5 | 9.6e-13 | 251 | 275 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+f+++tG CkyG +CkF H+p Pgl003891 251 ETICPFYLKTGVCKYGVNCKFDHPP 275 679********************96 PP | |||||||
6 | zf-CCCH | 43 | 7.5e-14 | 300 | 325 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tGtCkyG++CkF H+p Pgl003891 300 GEATCPFYMKTGTCKYGATCKFDHPP 325 5789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.028 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7 | 3 | 23 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 6 | 23 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.662 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-10 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 59 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-7 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.173 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 142 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 143 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.328 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-6 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 206 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 208 | 233 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 210 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.685 | 248 | 276 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-7 | 248 | 275 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 250 | 275 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 251 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 253 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.525 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-11 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 302 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-6 | 304 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
SVLIXMKTGI CKFGSKCKFR HPKDXVGNFK SDENVDGSEV KPATSDVVTL PERPGEPECA 60 FFVKTGICKY GAKCKFDHPK DKGGSLKISE HKGEGDSAIT VGTEGQGVSG VVNGKTENIA 120 AAIKPATMHN TKGLPIRPGE PDCPFYVKTG SCKFGSNCRY NHPDRILVNT PPAIMPFAAQ 180 DQPLVGYSGM LPQHSLGAPI PPQRPGEPEC TFYIKTGECK FGPSCKFHHP LNRPDPSVKL 240 TLAGLPRREG ETICPFYLKT GVCKYGVNCK FDHPPPGELD TARAQPPVKL TLAGFPRREG 300 EATCPFYMKT GTCKYGATCK FDHPPPGEAV AKAVAMAVTT EDNLEDEDKM GSGNVVGAKA 360 TDENLKV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.13857 | 0.0 | root| somatic embryo| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148293.1 | 1e-87 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_008447068.1 | 1e-87 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
Refseq | XP_021972715.1 | 3e-88 | zinc finger CCCH domain-containing protein 37-like | ||||
Swissprot | Q5ZDJ6 | 3e-81 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A0D6QVA8 | 1e-157 | A0A0D6QVA8_ARACU; Uncharacterized protein | ||||
STRING | XP_008447068.1 | 5e-87 | (Cucumis melo) | ||||
STRING | XP_004148293.1 | 5e-87 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 5e-78 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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