PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl003851 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 369aa MW: 42129.9 Da PI: 7.2154 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.2 | 1.9e-17 | 95 | 181 | 1 | 81 |
trihelix 1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt +e+l+Li+a++ ++ + g k++ +W+ s+++++ g++r+++qC+++w+ ++ +ykki++ e++ se++s +++ Pgl003851 95 RWTVSETLTLINAKQVEKNLPSPGgfmkqaKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYEQSIVSEHESYWSM 181 8**************99998886433333378899******************************************9999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-6 | 86 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.435 | 88 | 158 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.4E-12 | 93 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDKHSCCPST ETLYLGPDIF QLEDPHTIED ILPLDNEMLS DSFPDVICTQ VGSQGAYALT 60 IPHNEVTVGE VHDALPLSEV ERTITQKKQP KGRVRWTVSE TLTLINAKQV EKNLPSPGGF 120 MKQAKSAIEK WKCTSAQCHS NGLNRTATQC RDRWDHIQPD YKKIRHYEQS IVSEHESYWS 180 MTTKERIDKK LPANFTKEIF DAMEKHFGQN RTIHPGDMVI DTSASNYGAF EQNAASESTP 240 LHKNMKLEMP LENQGDTSID RDSHFTGKKR KVASMTSGIK STLVENNKKI ISNLKLAEQG 300 HLKRHEKYCS MFEQRMEIDE KYLKDHIVSV QRMIYIEEQK VKAQQELITA LNNIGQAMFK 360 ICETMGKKV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNP6 | 0.0 | B8LNP6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 8e-23 | Trihelix family protein |