PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003626
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 382aa    MW: 43127.2 Da    PI: 8.18
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29745539PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-36702PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv+yL+kk++++ +++  +i+evd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++k +++ 
  Pgl003626  14 LPPGFRFFPTDEELVVHYLCKKAASQMIPV-PIIAEVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKgGKKR 112
                79****************************.88***************8888899***************************************966777 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+apkg+kt+W+mheyrl
  Pgl003626 113 VGIKKALVFYAGKAPKGTKTNWIMHEYRL 141
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6310167IPR003441NAC domain
PROSITE profilePS5100561.18714167IPR003441NAC domain
PfamPF023657.9E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGTTRRNAEA ELQLPPGFRF FPTDEELVVH YLCKKAASQM IPVPIIAEVD LYKYDPWQLP  60
EKALFGEKEW YFFTPRDRKY PNGSRPNRAA GSGYWKATGA DKPITAKGGK KRVGIKKALV  120
FYAGKAPKGT KTNWIMHEYR LADVSRPARK KGSLRLDDWV LCRIYNKQIS AEKLALEQKE  180
SSHDVPMEAI DEKDMENQPA STSIEHSGIE QNNPSSDHLR KLGPSPTSHT AVPPRAYPVN  240
SNINLQNRDF FQNTTNLFNA STLKAPVQNT AFNPISSSID RQWTNYNSTD LISGLHTDSS  300
SSKPSSSSDP ISEKEEVQSS FRLENSSQAQ PQSVYNFSLD GLQNPFPQLD QITFLDAYQD  360
YFTGLTTSDY LPKFNPNDMQ FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-8811731174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.72900.0somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-105NAC domain-containing protein 68-like isoform X2
RefseqXP_010922868.21e-104NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-175A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr6P32330_0011e-101(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-94NAC family protein