PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl003609

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TALE

Protein Properties

Length: 383aa MW: 42692 Da PI: 5.6647

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-1170	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	312	344	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++++ LA+++gL+++q+ +WF N+R ++ Pgl003609 312 PYPSESQKIALAESTGLDQKQINNWFINQRKRH 344 8*****************************885 PP
2	ELK	40.7	5e-14	264	285	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrKYsgyL+sLkqEF+ Pgl003609 264 ELKDQLLRKYSGYLSSLKQEFL 285 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	2.1E-18	120	164	IPR005540	KNOX1
Pfam	PF03790	1.4E-21	121	163	IPR005540	KNOX1
SMART	SM01256	3.4E-24	169	220	IPR005541	KNOX2
Pfam	PF03791	3.6E-23	172	219	IPR005541	KNOX2
PROSITE profile	PS51213	11.592	264	284	IPR005539	ELK domain
SMART	SM01188	7.1E-8	264	285	IPR005539	ELK domain
Pfam	PF03789	6.1E-11	264	285	IPR005539	ELK domain
PROSITE profile	PS50071	12.6	284	347	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-19	286	360	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-13	286	351	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-27	289	349	IPR009057	Homeodomain-like
CDD	cd00086	1.68E-12	296	348	No hit	No description
Pfam	PF05920	1.4E-16	304	343	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	322	345	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
XSRPCQGANK FEPANAHIGG GAGHFVMEQF IPEQAVISDS SISSVKTEVC SGSGGTGVPG 60 QFELIRRKEE GRCARAYAEP SFVVTPLVTS LPPQQQEARM VTSLAVDMDS SCSCKPIEAD 120 AMKAKIIAHV HYPRLVAAYI DCQKVGAPPD VVSELDELSQ KCHAQQCVAT ISIGADPELD 180 QFMEAYCEMF IKYQEELTKP FKEAMAFLKK IENQLGALTK GTIRTSSLDQ GDERGDGAAS 240 SEEEDGSGGE VEFHEVDPHA EDRELKDQLL RKYSGYLSSL KQEFLKKKKK GKLPKEARQK 300 LLDWWTRNYK WPYPSESQKI ALAESTGLDQ KQINNWFINQ RKRHWKPSEE MQFVVMDSPN 360 PHNAAFFLEG HLRTDGTAFS MDC

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

XSRPCQGANK FEPANAHIGG GAGHFVMEQF IPEQAVISDS SISSVKTEVC SGSGGTGVPG  60
QFELIRRKEE GRCARAYAEP SFVVTPLVTS LPPQQQEARM VTSLAVDMDS SCSCKPIEAD  120
AMKAKIIAHV HYPRLVAAYI DCQKVGAPPD VVSELDELSQ KCHAQQCVAT ISIGADPELD  180
QFMEAYCEMF IKYQEELTKP FKEAMAFLKK IENQLGALTK GTIRTSSLDQ GDERGDGAAS  240
SEEEDGSGGE VEFHEVDPHA EDRELKDQLL RKYSGYLSSL KQEFLKKKKK GKLPKEARQK  300
LLDWWTRNYK WPYPSESQKI ALAESTGLDQ KQINNWFINQ RKRHWKPSEE MQFVVMDSPN  360
PHNAAFFLEG HLRTDGTAFS MDC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6232	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vegetative meristem. Present in the base of flower primordia (PubMed:26390296). {ECO:0000269\|PubMed:12900451, ECO:0000269\|PubMed:26390296, ECO:0000269\|PubMed:7866029}.

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269\|PubMed:11934861, ECO:0000269\|PubMed:12900451, ECO:0000269\|PubMed:7866029}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022870905.1	1e-109	homeotic protein knotted-1 isoform X1
Swissprot	P46639	1e-108	KNAT1_ARATH; Homeobox protein knotted-1-like 1
TrEMBL	Q8GZN0	0.0	Q8GZN0_PICAB; KNOTTED1-like homeodomain protein 2 (Fragment)
STRING	Cagra.7524s0001.1.p	1e-108	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	3e-99	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
dela Paz JS, et al. Chromosome fragile sites in Arabidopsis harbor matrix attachment regions that may be associated with ancestral chromosome rearrangement events. PLoS Genet., 2012. 8(12): p. e1003136 [PMID:23284301] Liu C, et al. Phosphatidylserine synthase 1 is required for inflorescence meristem and organ development in Arabidopsis. J Integr Plant Biol, 2013. 55(8): p. 682-95 [PMID:23931744] Liu B, et al. NEVERSHED and INFLORESCENCE DEFICIENT IN ABSCISSION are differentially required for cell expansion and cell separation during floral organ abscission in Arabidopsis thaliana. J. Exp. Bot., 2013. 64(17): p. 5345-57 [PMID:23963677] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368] Scofield S,Dewitte W,Murray JA STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1. Plant Signal Behav, 2018. [PMID:24776954] Lee JE,Lampugnani ER,Bacic A,Golz JF SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. Plant J., 2014. 80(1): p. 122-35 [PMID:25060324] Rast-Somssich MI, et al. Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes Dev., 2015. 29(22): p. 2391-404 [PMID:26588991] Duplat-Bermúdez L,Ruiz-Medrano R,Landsman D,Mariño-Ramírez L,Xoconostle-Cázares B Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering. Gene, 2016. 587(2): p. 120-31 [PMID:27154816] Li Z, et al. Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis. J Integr Plant Biol, 2016. 58(12): p. 959-970 [PMID:27273574] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Frangedakis E,Saint-Marcoux D,Moody LA,Rabbinowitsch E,Langdale JA Nonreciprocal complementation of KNOX gene function in land plants. New Phytol., 2017. 216(2): p. 591-604 [PMID:27886385] Woerlen N, et al. Repression of BLADE-ON-PETIOLE genes by KNOX homeodomain protein BREVIPEDICELLUS is essential for differentiation of secondary xylem in Arabidopsis root. Planta, 2017. 245(6): p. 1079-1090 [PMID:28204875] Douglas SJ,Li B,Kliebenstein DJ,Nambara E,Riggs CD A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE, 2017. 12(5): p. e0177045 [PMID:28493925] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856]